Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1739 ATGGAGAACTCATTTGGATGCTATGAAACAAAGATGAATTTGAAGGACACAGAGTTAAGGTTAGGATTGCCCGGAACCGATCACATGGAGGAAAAATGTTTAAGCAATTTCTCTGTTGTCAGAAGCAACAACAAGAGATCTTCACCAGAATCCACTCATGAAGAAGAATCCATAAACAAGAATGGTCCTAATAACACATGTGGTGATGACCAACACACTTATGTCCCACCTTCAAAGGCACAAGTAGTGGGATGGCCACCAATTAGATCTTACAGGAAGAACAATTTACAACACAAGAAGGATGAACATGTTGATGGGTCTGGGATGTATATAAAAGTTAGCATGGTTGGTGCACCTTATTTGAGAAAGATAGATCTCATGGTTTATAAGAGCTACACAGAACTCCTAAAGGCATTGGAGAACATGTTCAAGTGCACATTTGGTGAATATTCAGAAAGAGAAGGGTATAATGGATCTGAATATGTTCCAACTTATGAAGACAAAGATGGTGATTGGATGCTGGTTGGAGATGTTCCATGGAACATGTTCATGTCTTCCTGCAAAAGGCTGAGAATTATGAAAGTATCAGAAGAAAAAGGGGTTGAGTTGTTTTTGACCCTAAAAACAAAGCAGGACCATACACATAATCAAAACAATTCCCTATGCTATTTGTGA 675 0.3867 MENSFGCYETKMNLKDTELRLGLPGTDHMEEKCLSNFSVVRSNNKRSSPESTHEEESINKNGPNNTCGDDQHTYVPPSKAQVVGWPPIRSYRKNNLQHKKDEHVDGSGMYIKVSMVGAPYLRKIDLMVYKSYTELLKALENMFKCTFGEYSEREGYNGSEYVPTYEDKDGDWMLVGDVPWNMFMSSCKRLRIMKVSEEKGVELFLTLKTKQDHTHNQNNSLCYL* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1739 224 Pfam AUX/IAA family 17 201 IPR033389 -
Lan4g1739 224 Gene3D - 102 207 - -
Lan4g1739 224 MobiDBLite consensus disorder prediction 40 73 - -
Lan4g1739 224 ProSiteProfiles PB1 domain profile. 108 200 IPR000270 GO:0005515
Lan4g1739 224 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 6 202 IPR003311 GO:0005634|GO:0006355
Lan4g1739 224 PANTHER AUXIN-INDUCED PROTEIN 6 202 - -
Lan4g1739 224 SUPERFAMILY CAD & PB1 domains 105 194 - -
Lan4g1739 224 MobiDBLite consensus disorder prediction 58 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1739 Lan-Chr4 26070735 26072059 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1739 111 199 B3 DNA Binding Superfamily AT2G46530 41.573 4.79e-12 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lan4g1739 AUX_IAA 6.1e-56 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1739 K14484 - gmx:100780752 290.426
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g1739 4 26070735 26072059 Lan4g1739 4 26070735 26072059 ECH
Lan20g0167 20 1098700 1099780 Lan4g1739 4 26070735 26072059 LSH
Lan5g1260 5 26296364 26297570 Lan4g1739 4 26070735 26072059 PCT
Lan4g1739 4 26070735 26072059 Lan5g1260 5 26296364 26297570 PCT