Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1728 ATGTGTCTCTGTGCCACCTATTCACTAGCAAGGTTCAGCTTAATTATTAGTTGTGTCCAAACCAAAGCTATAACTCTCTCTCTTTCTCATACACACAGAGAGAGACCAAGTAATAAATATATAGCTAGGATTTGGAAGGAAGAAACAAAAAAACAAACCAAGACATTAGAATATCGTATCTTGCTTTTCTTCCCTTGTATTTTTCCTCCTCCTACTTGGAGTTTTTCTTCAAAGGCAATGTTCCCTGCAGTTATGTCCAATTCTACTTCTATATCAGAAGAAGCCAGTGTACTCTCTTCTGGTGCAAGAATTCATCAGGACTTGGGTGGATTAAATAACTTAGTCTCGTCCATTTCTCCTCAGAAGCAGCCTCAACTAAAGATCAAGAAAAAGAGAAGCCTCCCTGGTAACCCAGACCCAGATGCTGAAGTGATTGCCTTATCTCCAAAGACCCTTCTAGCCACAAACAGGTTTGTGTGTGAGATCTGCAACAAGGGTTTCCAAAGGGACCAGAATCTTCAGCTTCATAGGAGAGGTCATAACCTGCCATGGAAGCTGAAGCAAAGGAGCAACAAAGAGGTGAAAAAGAAAGCATACGTTTGCCCTGAGGCTTCATGTGTTCACCACAACCCATCAAGGGCTCTTGGAGATCTTACAGGAATTAAGAAACATTACTGCAGAAAACATGGAGAGAAGAAGTGGAAGTGTGACAAGTGCTCTAAGATCTATGCTGTTCAGTCAGATTGGAAAGCTCACTCTAAAACATGTGGTACTAGAGAGTATAGATGTGATTGTGGAACCCTTTTTTCCAGGAAGGACAGTTTCATAACTCATAGAGCATTTTGTGATGCATTGGCTGAAGAAAGTGCAAGAATGTCAGCAAACCAAATAGCCAACAACACCACAAACCCATTACCCCAATCTCTCTTCTGTTTCCCATCTCAACAACAAAATTTCCAAAATCAATTCACCACCCTCAATCCATGGGACCCTTCACATGAAAACCCTAACCCTAGCAACATTACCACTGCTTTCCACAACATCAAGCCTGAAGCTCAAAACTTTCACATACCCCACAACAACAACAGCAACAATAGCCCTTCATTTCTTCATCACTCCAAGGGCATAATAACCTCCTCACCTTTCAGGAACCTCTACATGCACTCACAAAACTCTTCAAACTCTGTCACATCAGCATATCTCTCAGCCACTGCATTGCTGCAGAAAGCAGCAACTGTTGGTGCTTCTGCCATCACAGGCCCTAATGCCTCCACCACCGTATCCGTTGGTGGTGACCAACAACAGCATGTGACTCATCACGTGACTCAACTCAGCATGGGCGAGTTTGGAACAATGGCTCAACTCAACAACTCGGTGATACCTGATCATCATCACTACATCAACATGAAGGGGCTAAGCAAGAATGAGACAAGGGACTTTCTAGGGCTAGCTAATGGCGGTGGCGGCCGAGGAGACAGTGGTGGAAATGCGGTTGAAGTTAGCATTAACGTGAAGGATATGCTAACGTTCACCGGAAATGTAGAGTACCAGAACCACCACCAACCTTATGAGCACCATCTCCACTCATCACAGTTCAAGTCCCAACAACAAGGTGGTTTTGGATTCATTGGGACAACCACTGCCCCTGAGTCATGGGGGAATTGTTAA 1668 0.4388 MCLCATYSLARFSLIISCVQTKAITLSLSHTHRERPSNKYIARIWKEETKKQTKTLEYRILLFFPCIFPPPTWSFSSKAMFPAVMSNSTSISEEASVLSSGARIHQDLGGLNNLVSSISPQKQPQLKIKKKRSLPGNPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSNKEVKKKAYVCPEASCVHHNPSRALGDLTGIKKHYCRKHGEKKWKCDKCSKIYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARMSANQIANNTTNPLPQSLFCFPSQQQNFQNQFTTLNPWDPSHENPNPSNITTAFHNIKPEAQNFHIPHNNNSNNSPSFLHHSKGIITSSPFRNLYMHSQNSSNSVTSAYLSATALLQKAATVGASAITGPNASTTVSVGGDQQQHVTHHVTQLSMGEFGTMAQLNNSVIPDHHHYINMKGLSKNETRDFLGLANGGGGRGDSGGNAVEVSINVKDMLTFTGNVEYQNHHQPYEHHLHSSQFKSQQQGGFGFIGTTTAPESWGNC* 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1728 555 ProSiteProfiles Zinc finger C2H2 type domain profile. 158 180 IPR013087 -
Lan4g1728 555 Pfam Zinc finger, C2H2 type 158 180 IPR013087 -
Lan4g1728 555 ProSitePatterns Zinc finger C2H2 type domain signature. 160 180 IPR013087 -
Lan4g1728 555 SUPERFAMILY beta-beta-alpha zinc fingers 157 254 IPR036236 -
Lan4g1728 555 SMART c2h2final6 158 180 IPR013087 -
Lan4g1728 555 SMART c2h2final6 234 254 IPR013087 -
Lan4g1728 555 SMART c2h2final6 199 229 IPR013087 -
Lan4g1728 555 Gene3D Classic Zinc Finger 137 210 - -
Lan4g1728 555 Gene3D Classic Zinc Finger 227 295 - -
Lan4g1728 555 PANTHER PROTEIN INDETERMINATE-DOMAIN 12 87 525 - -
Lan4g1728 555 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 87 525 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1728 Lan-Chr4 25945227 25949358 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1728 106 540 IDZ Gene Family AT4G02670 48.879 2.15e-122 364
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan4g1728 zf-C2H2 0.0057 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1728 K25870 - gmx:100780056 612.453