Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1716 ATGAGAGAGGGTTTGAGATCTCGAACTCGACTGGGGAAGGATTCTGGTGCTGGAGGAGTTGTGGAAAGGGGTGGATTGGAAAAGGAGAGTTTTGATTTGAATGTTGAGGGTTCTTCGGTGCCGCAGGAAGAGGCATTGAACTCAACGACTGAGAAGAAGGATGAGGTTGACTGTGCGGTGGAAAAATTTGATTTGAATGAAAGTCCTGGTGGGAATGCTGACTTAACTGAGGATGTGAATGATAAGGGTTGTAGTAGTCTTGGTGGTAGGGGTAGTGTTAGAGAAGCTGATGTTGAGGCAGAGGTGGATAAAAATGAAGCGAACGAGAAGGGTTGTTGTAGTGGCGAGGGTAGCTTTATAAAAGCTGATGTTGAGACAGAGGTGAATAAAAAGGAAGGTTCAAATGATAGTGTGTTGATTGGCGGTCGAGTGTTGCGCTCAAGGTCTAAGAGGGCAGATGATAATAAATCTTGTAATAGGGAGAATAGTGGTGCCCTTCATGGTGAAACTAATGAAAGCAGTGTGCTTGAGAGGATAGAATCTACGAAGGAATATGATGAAGCTGATGAGTATGTCAGTGATGGTCATGTGAATGAAAAGGATAAGCTAAAAAGGAAAGGGCACAAGAGGAATTTGAAAAGGAAGCGTGGTAGACCTCCCAAAATAAAGTTGGAAGAGGAAGCTCAATTTGTTGACCAGTTGCCATGTAAGCGTGGGAGGCCTCCTATAATAAGGTTGAACGAGCAAGGCCAATCAGTTGATCAATTGACACATAAGCGTGGAAGACCTCCCAAGGCTGGCATTCAAAACCAGTTCCTAAAAGTGGTGCATAGTAGAAAAGGAAAGGTGGTTTTTCGAAAAGGTAAAAAAGGTTTAACTGCCAGATATAGTGCAACTGTGAATGCAATTTCTGGTACACACTCAGGGAGAGCTTCTGAGAGAGAGTTAGAAAAGAAGGGTTTTTCTCCAGTCAAGAAGAATAAATTTGTGAAGGTTTTGAATACTGAGAACAATGGAGTAGCCTCACCGGTGACATCAAATGCAGTGAAAGCCCCTGTTGGTGGTAAAAGTTTAAGAAACAAAGCAAAACAGTTGGTGAGGGAACAAATAATGGAAAGGCTCTCAGCTGCAGGCTGGACAGTTGATTATAGACAAAGGAGTGGAAGAGATTACCGTGATGCGGTGTATGTTAGTCTAGATGGAAAGACACACTGGTCAATCACTTTGGCCTACAATAGGCTTAAAAACCACTACGAAGCTGGTGATGGTGAAGGTAAGGTGTACGGATCAGGTTTCAAATTTACTCCAATACCAGAAAAGGATTACCAAATACTAACCAAGGTAGTCAACAAGGAAAGAAATGATAAAAATAAACCAAGGCCAAAGGGCGGGAATGGCGAAGAGACTGTTGATAGAGTCAATAAAAAATTGAAAAAAGAAAGACTGGGTTCTGGTGCAGGCAAGGGTAAAATTAAAAGGAAACGGTCACTTCATGAGGAGGGCAGTACGGCACCTAGCAGGATGTCAATTATGGCCAGGGATCATAAGCGACACAAAACGCAAAACAAGAAGCGATGTGCTCCATTGGTTCGCAATGCAGAGGAGGAGATAGATTCTGAAACTGATGGCTATGTACCTTACAATGGAAAGCGAACCGTGCTTGCCTGGATGATTGATTTGGGAACGATTGTGCAAAACCAGAAGGTTCATTATATGCAAAATAGAAGGGGGTTTTCACCAACGCAGGGTAGGATCACAGGTGATGGCATTCATTGTGGTTGCTGTAATGAAATAGTAACGATTTCAGACTTTGAGGCTCATGCAGGAAGCAAACTCTCAGACCCACTTAAAAATATATATATTGAGGGTGGAATTTCTCTCTTACAATGCATGCTAGATTCATGGGACAAGCAAGATGAATTTGAACGTAAAGGTTTTCATTTTGTTGATACTGCGGGTGAAGATCCAAACGATGATACATGTGGTGTCTGTGGAGATGGTGGAGACCTGATCTGTTGTGATGGTTGCCCATCGACATTCCATCAAAGCTGCCTGGATATAAACAAGTTCCCATCTGGTGACTGGCACTGCATTTATTGTTGCTGCAAATTTTGTGGGTTGGCTGGAGGAAGTTCAAACCAAAAGGACATCAATGGTGGTTTTACCGTGTCTACATTATTGACATGCCACTTATGCCAGGAAAAATATCATAGATCCTGTACTGAGGCAAATGTTGCCATGACCGATGATTCTAAAGATCCCATTTTTTGTGGAAGCAAATGTGACCAGTTATCTGAGAGACTCGAAATGCTTCTTGGGGTTAAACATGAAATTGAAGATGGGTTTTCCTGGTCTTTTATTCGGCGGTCAGATGTTGGTTTTGATGCTTCTAAGATAAAACCTGAGATAGTTCAATGTAATTCCAAGCTAGCTGTTGCATTAACAATAATGGATGAGTGCTTCATGCCATATATTGATCATAGAAGCGGGACAAACCTGATTCACAGTATTCTATATAATTGTGGATCGAACTTCAAACGGCTTAACTGTAGTGGATTTGTTACTGCAATTCTAGAGAGAGGTGATGAGGTCATATCTGCAGCAACTATCAGGATCCATGGAAACCAACTAGCAGAGATGCCATTTATTGGGACCCGCTATATGTATAGGCGACAAGGAATGTGCCGCCGACTTCTAAATGCCATCGAATGTGCACTGAGCTCTTTAAATGTTGATTTATTGGTCATACCAGCCATCTCAGAACTCATAGAAACTTGGACGTCTGTTTTTGGGTTTGAACCACTTGACTTGACAAGCAAGAAATTAATAAATAATAAGAATCTTGTGGTATTCCCTCATGTAGATATGTTACAGAAAAAGATACACAGCCATAAATTAGCTGGTGAGAATCTGATTCCTTTAGAAGTTTCTAATATTCAGAAGAGTCATACAATACACAAGGTAGCTAATTTTTGTGATGGGGCAGGCTCATCTGGATCTGACTTGATCAATTTTGCTGGGATCCCTCCCTCTAATGCATGTCAGATAAATGAATCTGGTTATCAGCCCCCTGAGGGATCATTGAACGAGGCACTCGACATCACTAGCAACACTATAGATCATGATACATCTCCAGATGATGTCACATGTCCAGCTGTATGTCAGGCAATTGATGAAAATATGGCAGTGGAAGCTGCAGATGCCCATGATTATGCGAGTGATACTTGTTACCGAGCTCAAGACAAGAGTATCAGTTATAATTGTACCAGACCGTACCATGATCAGAAGTCCATAGATTTAGATAGCCAATCAAATAAGTGTTGTATTACTTGTGAGGAAAAGCAATGTCTCAGCGTGTCTCATATTAACACTGAAGCTGCTGAAGGACATTATGTTCATACTACAGAATCAAAAGATTCTGCTGACATTATTCTCCATGGTTCACATAAGATGTCTGACAGCTGTGAACTGAAAAGCAAAAACGATTGTGTTCAGCCGTACTTCACAGGATCAGAAGTACAAGCTGTGAATGATTGTGCTTCTCATTGTAGACCCGACACCAACAATGATTGTGCCGCCAGTGAAGCAGTTCTTATAAAAGATGTCACAAAGAACTTTACTGAAGATCTGCCTGCGGCAAATTGTGAAAAAGGTTTGAGTATGGTTAGTGTGTCAGATGTGAATGAAGCAAACATATGTTCAGTCAAAGCACCTAATCTCCAGACAAACATAAACCCTGAATATTGCCAATCCATAGTGGTATCTTCAGGTTTTTGTGAGAAGATTGTTGATGGTGTCAAGGAGAGGAATGAAGCACCCAGTGTAGCTGAGGTCAATTTCCTTGTTGCTGATAAAGGCATGGTTCCTGATAATAAGCTTGGTATCGCAGGGTCTTCAGAGTTAGAAGAGCCTGATTTGCAGCTTGATCAAACGGCACAGAGCAACCCTCCATCATTGTGTAGCCCAAACACTGCTTCTGGCATGTGCCCTCATTGGGCATCTACTGACAGTACTTCGTGTGGTAGTACGGAGGCAATAGTTTTGTCAAACCAAGCCATGTAA 4062 0.419 MREGLRSRTRLGKDSGAGGVVERGGLEKESFDLNVEGSSVPQEEALNSTTEKKDEVDCAVEKFDLNESPGGNADLTEDVNDKGCSSLGGRGSVREADVEAEVDKNEANEKGCCSGEGSFIKADVETEVNKKEGSNDSVLIGGRVLRSRSKRADDNKSCNRENSGALHGETNESSVLERIESTKEYDEADEYVSDGHVNEKDKLKRKGHKRNLKRKRGRPPKIKLEEEAQFVDQLPCKRGRPPIIRLNEQGQSVDQLTHKRGRPPKAGIQNQFLKVVHSRKGKVVFRKGKKGLTARYSATVNAISGTHSGRASERELEKKGFSPVKKNKFVKVLNTENNGVASPVTSNAVKAPVGGKSLRNKAKQLVREQIMERLSAAGWTVDYRQRSGRDYRDAVYVSLDGKTHWSITLAYNRLKNHYEAGDGEGKVYGSGFKFTPIPEKDYQILTKVVNKERNDKNKPRPKGGNGEETVDRVNKKLKKERLGSGAGKGKIKRKRSLHEEGSTAPSRMSIMARDHKRHKTQNKKRCAPLVRNAEEEIDSETDGYVPYNGKRTVLAWMIDLGTIVQNQKVHYMQNRRGFSPTQGRITGDGIHCGCCNEIVTISDFEAHAGSKLSDPLKNIYIEGGISLLQCMLDSWDKQDEFERKGFHFVDTAGEDPNDDTCGVCGDGGDLICCDGCPSTFHQSCLDINKFPSGDWHCIYCCCKFCGLAGGSSNQKDINGGFTVSTLLTCHLCQEKYHRSCTEANVAMTDDSKDPIFCGSKCDQLSERLEMLLGVKHEIEDGFSWSFIRRSDVGFDASKIKPEIVQCNSKLAVALTIMDECFMPYIDHRSGTNLIHSILYNCGSNFKRLNCSGFVTAILERGDEVISAATIRIHGNQLAEMPFIGTRYMYRRQGMCRRLLNAIECALSSLNVDLLVIPAISELIETWTSVFGFEPLDLTSKKLINNKNLVVFPHVDMLQKKIHSHKLAGENLIPLEVSNIQKSHTIHKVANFCDGAGSSGSDLINFAGIPPSNACQINESGYQPPEGSLNEALDITSNTIDHDTSPDDVTCPAVCQAIDENMAVEAADAHDYASDTCYRAQDKSISYNCTRPYHDQKSIDLDSQSNKCCITCEEKQCLSVSHINTEAAEGHYVHTTESKDSADIILHGSHKMSDSCELKSKNDCVQPYFTGSEVQAVNDCASHCRPDTNNDCAASEAVLIKDVTKNFTEDLPAANCEKGLSMVSVSDVNEANICSVKAPNLQTNINPEYCQSIVVSSGFCEKIVDGVKERNEAPSVAEVNFLVADKGMVPDNKLGIAGSSELEEPDLQLDQTAQSNPPSLCSPNTASGMCPHWASTDSTSCGSTEAIVLSNQAM* 1354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1716 1353 MobiDBLite consensus disorder prediction 94 109 - -
Lan4g1716 1353 MobiDBLite consensus disorder prediction 449 501 - -
Lan4g1716 1353 SMART PHD_3 702 762 IPR001965 -
Lan4g1716 1353 SMART PHD_3 660 701 IPR001965 -
Lan4g1716 1353 CDD PHD1_AIRE 661 700 - -
Lan4g1716 1353 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 29 1188 - -
Lan4g1716 1353 MobiDBLite consensus disorder prediction 202 218 - -
Lan4g1716 1353 ProSiteProfiles Zinc finger PHD-type profile. 658 703 IPR019787 -
Lan4g1716 1353 MobiDBLite consensus disorder prediction 1 109 - -
Lan4g1716 1353 SUPERFAMILY FYVE/PHD zinc finger 653 706 IPR011011 -
Lan4g1716 1353 MobiDBLite consensus disorder prediction 449 505 - -
Lan4g1716 1353 Pfam Tify domain binding domain 583 632 IPR032308 -
Lan4g1716 1353 MobiDBLite consensus disorder prediction 173 201 - -
Lan4g1716 1353 MobiDBLite consensus disorder prediction 145 220 - -
Lan4g1716 1353 MobiDBLite consensus disorder prediction 47 62 - -
Lan4g1716 1353 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 801 961 IPR000182 GO:0016407
Lan4g1716 1353 MobiDBLite consensus disorder prediction 146 160 - -
Lan4g1716 1353 PANTHER PHD FINGER PROTEIN 12 29 1188 IPR042163 GO:0003714|GO:0045892
Lan4g1716 1353 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 649 718 IPR013083 -
Lan4g1716 1353 SMART AT_hook_2 257 269 IPR017956 GO:0003677
Lan4g1716 1353 SMART AT_hook_2 213 225 IPR017956 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1716 Lan-Chr4 25844170 25853569 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1716 212 967 PHD Transcription Factor Family AT5G36670 40.436 0.0 585
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1716 - - lang:109346644 2737.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g1716 4 25844170 25853569 Lan4g1716 4 25844170 25853569 ECH
Lan20g0188 20 1238542 1246764 Lan4g1716 4 25844170 25853569 LSH