Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1705 ATGGCTGTTGCGCCACTATGTAGTAGTAGACTTCAAAGCATGTTGAAGGCTACGGTGCAATCTGTTCAGTGGACTTATAGCATCTTCTGGCAACTTTGTCCACAACAAGAGATTCTGGTATGGGAAGATGGGCACTACAACGGGGCAATAAAGACAAGGAAGACAGTGCAAACAATGGAGGTGGGTGGTGATGAAGAGGGTACTCTCCAAAGAAGCAAGCAACTTAGAGAACTCTATGAATCCTTGTCTGTTGTAGAGACAAACACACATACTCGTTGCTCTTTTGCTGCTTTATCACCAGAAGACTTAACAGAATCTGAATGGTTTTATTTGATGTGTGTCTCTTTCTCCTTTGCTCCAGGTGAAGGGTTGCCGGGAAAGGCATATGCAAAGAGGCAGCATATATGGCTCGTTGGTGCAGATGAGGTTGACAACAAAACATTTTCAAGAGCTATTCTTGCAAAGAGTGCTCACATACAGACAGTGGTGTGCATTCCTGTATCAGACGGCGTCGTTGAGTTGGGCACAACGGATAAGGTTCAGGAAGACCTTAATTTCATCGAACACATCAAGACCTTTTTCACAGATGTTCACAACTTCCACCACCATCCTCCGCCGCCAAAGCTCGCCCTATCGGAGCACTCAACCTCCAATCCCGCTTCCTCATCCGATCACTTTCACGCAGTCATGTACACCGCCGCGGATCCAACAACCACCAATATTCTCAAACATGATGGCATAAATGTAGATGATGATGAAGATGAATGTGAAACTGAGACGGAAGATGAAAGAGGCTATAACACCCACCAAACCTTGAACGCGAAGATGGCAGAACCAAGTGAGTTAATGCAGGTGGAGATGGCAGAGGATATCAGAATTGGGTCATCAAACGACGGTTCCAACAACTTGGACTCGGATTTTCATTTCATAGCGGTGACTCAGACCGGTTATCCGTCAAGTATATCCGACTCGGTCCCAACCCAAGGTTCGCTTCAACCGCCTTCAGTAATACCACTTCTTCCTCTAGAAGACATGACACAAGAAGACACCCACTACTCTCAAACGTTATCCAATATCCTCCAAAACCAGTATACCTGTTGGGTTGAATCACCCTCTATTAGCTACAACACATACTCCACCTTTCAATCAGCTTTCACCAACTGTAACATCTTCCCCAACCACCACCACCACCTCCTCCCCAAGGCGGCACTGGATGGCACCTCTCAACGGCTCCTCAAGTGCATTCTTTTCACTGCCCCATACCTACACGCTAAGAACCATGTAGAGAAATATTCTCCTCAAACCCTAGACACTGCCACAGACTCTGGAGGAGACCTTGCCGCCCAAATACGTGGCAAGGGGATACCTCAAGATGAGCATAGCACTACGCACGTTCTGGCTGAACGCCGCCGCCGCGAGAAACTGAATGAGAGGTTCATCATTCTAAAGTCACTGGTGCCCTTCGTGACCAAAATGGACAAGGCTTCAATATTAGGTGACACCATTGAATACGTGAAACTGCTTCGCCGGAGGATCCAAGACCTTGAAGCGCGTAACCTACAAATACTGGAGAAGGAAGAACAACGTTCAAAAAACACAGATATTATAGAGATGCAAAGGGCTTGTACAAGCAGCTCCACAAAGGAACAACAGAGAAGTGGGGTAACGGTAATGGTGGGAACCAATAAGAGGAAGGTAAGGATCGTGGAGAGGAATGATGAGGAAGCCTTAACGTCGGTGCAAGTTTCGATCATAGAGAGTGATGCGTTGTTGGAATTGGAGTGCCCTCATAGAGAAGGGTTGCTTCTTGATGTGATACAGAAGCTGAGGGAGTTGAGGATAGAGGTCATAGGAATGAAGTCGTCGCTGAATAACGGTGTTCTTGTGGCGGAGTTGAGGGCAAAGGTGAAGGGAAATGTTAAGGGGAAGAAGGTTTGCATTGTGGAAGTGAAAACTGCACTCAGCCAAATTATACCTCAAACTATTCAATAG 1992 0.4664 MAVAPLCSSRLQSMLKATVQSVQWTYSIFWQLCPQQEILVWEDGHYNGAIKTRKTVQTMEVGGDEEGTLQRSKQLRELYESLSVVETNTHTRCSFAALSPEDLTESEWFYLMCVSFSFAPGEGLPGKAYAKRQHIWLVGADEVDNKTFSRAILAKSAHIQTVVCIPVSDGVVELGTTDKVQEDLNFIEHIKTFFTDVHNFHHHPPPPKLALSEHSTSNPASSSDHFHAVMYTAADPTTTNILKHDGINVDDDEDECETETEDERGYNTHQTLNAKMAEPSELMQVEMAEDIRIGSSNDGSNNLDSDFHFIAVTQTGYPSSISDSVPTQGSLQPPSVIPLLPLEDMTQEDTHYSQTLSNILQNQYTCWVESPSISYNTYSTFQSAFTNCNIFPNHHHHLLPKAALDGTSQRLLKCILFTAPYLHAKNHVEKYSPQTLDTATDSGGDLAAQIRGKGIPQDEHSTTHVLAERRRREKLNERFIILKSLVPFVTKMDKASILGDTIEYVKLLRRRIQDLEARNLQILEKEEQRSKNTDIIEMQRACTSSSTKEQQRSGVTVMVGTNKRKVRIVERNDEEALTSVQVSIIESDALLELECPHREGLLLDVIQKLRELRIEVIGMKSSLNNGVLVAELRAKVKGNVKGKKVCIVEVKTALSQIIPQTIQ* 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1705 663 Gene3D - 457 535 IPR036638 GO:0046983
Lan4g1705 663 SMART finulus 465 514 IPR011598 GO:0046983
Lan4g1705 663 Pfam Helix-loop-helix DNA-binding domain 462 508 IPR011598 GO:0046983
Lan4g1705 663 MobiDBLite consensus disorder prediction 204 223 - -
Lan4g1705 663 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 459 521 IPR036638 GO:0046983
Lan4g1705 663 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 459 508 IPR011598 GO:0046983
Lan4g1705 663 PANTHER TRANSCRIPTION FACTOR TT8 10 660 - -
Lan4g1705 663 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 11 194 IPR025610 -
Lan4g1705 663 PANTHER TRANSCRIPTION FACTOR TT8 10 660 - -
Lan4g1705 663 Coils Coil 505 525 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1705 Lan-Chr4 25754894 25761852 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1705 340 658 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09820 36.677 1.98e-45 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan4g1705 bHLH-MYC_N 6.1e-55 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1705 - - lang:109346631 1300.8