Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1688 ATGGATAAAATAGCTGATTCTAGTGGCGAGAACAAGGAAGATAATGTAGATAAACCATTTCATCATTTTATAGTTCCTGATGATTCTTCTCTATCTCTAATTGACTTCCCTCCATATGAACTACCACTGTATGAGATTTCACAAAGTTCAAATGAATTTGATTCATTAGTTGTAGAATCAGATCATCATAGAGAAGAACCAGAAGTGCATATGCATGAGCTTGTGGATTGGAATGATTCGTTTGCAATCAAGGTTGAGGAGTTATTGTTATCTAATTTGCAAGCAGTTTTCAAGGATGCAATCGAGCAGATTGTTGAGTTGGGCTATAGTGAAGATGTAGCCGAGAAAGCCCTTTCAAGGAAGGCCATATACATACAGGAAGGAGACCCTGTCTCTAATATTGTTAATGATACATTGAATGTTTTGAAGGGAAAATATGTTGCCACTCCAGATGTTTTGAAGGGAAAAGATATTGCTACTTTAGATGTTATCTTCGAAAATTTTCAGCACATGTTGTATTACACCATGTTGGAGATGATCACTGTGCTTCGTGAAGTCAGACCATCCTTAACAATAGGTGAAGCGATGTGGGTATTGTTGATGAGTGACTTGAATGTTTCATTGGCATGTTCAGTGGAAGATTGTTTGAATGTTGTTTTTAATGGGGATAGTTATATTAGTCATTCATTTACCCAATCAAAGTCAGAGGTTCAAAGGTCTGACATAATTTCAAATTATAGTTCACCAACTTCACATGACTCATCCCCCACTTACAAGAAGTGTAAGTCTGAAGCACCTCCGCTTGGGAAGCTCCAAAATTCACCCAACGATAAAAGCTATTTTGCTTCAGAAGTAGTAAAGCCCCATGAAGAGAATGCTTCATTGCCAACTCCTACAGGTAAACCCCCTGGAACTTCAGGAGGTGATTGTAAAGTAGGACATTGTTCTAAGCGGCACAATAGAAAAGAAATTGCAGCACTTAGGCAGAAGTTTCTCCATATGGAGAAAGTGTATAGGGCCCGTGGAAAAGGGGGTTTGAAGACTGGTAAATTTACAAGTGTTGGTGGTTTGATGATTGATAAAAGAATTAAACCACCATATGATATTCATAATCAACAAATGAAAGGTGACTCTTCAAACACAACAAGCAAACAAGGAGTTTGTGCATCAGATGCAATGTGCCATGTTTCAACCAATGATGCATCTATTTTACCTATAGGAAGTAGCTCAAAAACATTATCAGACACAACATCCTCTCCCATAGAGAAACCCAATATTTCAGCATCAGAAACAATGTCCAAACCAAAATCTGAGCCAAGCTTCTTTGATGCTCAGCATATTCTTGATGAATGTGTTGGTATTCCGTATGATGAGTCTTTGGGTATGTATGTCCCGCGAGACCAAAAGGATGAAATAATTTTGAAGTTAGTTCCTCGAGTGAATTTATTGCAGGGTGAGCTGCAAAGCTGGAGCAGTTGGACAAATCAAAAGGTTATGCAGGTTACTACTAGGCTTGGAAGGCTGCAACCTGAGCTTAAAATGCTGAAGAATGAGAAGCAAGAAGCTGAAATAGATGCTAAACTTTTTCAGGAGAATATTGTGAATAGGATCTCTGAGATGGAGAATACTATGGAAAACACTAAAAAGCAAATTGAGAATACTACTTCTATTGCTTTCATGCGTGATGCAGAAAACACATTGCTAAAGAATGAGTTAGATGCTGCTAAGTTGTCATTTCAAGAATCAATGATAAGCCATCAACAAGCACTTGAGAGAGAACATATTGCTCTTCAAAAATTAGAGTCATTGGATCGCGAGAATGCATTGCATCGAGATGAGCTCGAGAGAGAGAAGCATAAGTTATCTAACCTACGACAACAACTTGACAAGGAGAAAACTCTTCTAGTCAAGGTTGAGGGTAGACTGGAAAAAGAGATAACAGAGATAGAAAATATCCTTAAACAATCCGCATCTATCATAGAGGAAAGGAAACAACTAGCAGAAAACATAAAAGTTGAGGAAGATAAGATCATAAAAAAGGCAGCCGGTAACTTGCAGAAATATGTAGAGGTGATTGCAAATCTTGAAACGCACTTGGAAGATCTGAAACAAAAATCGGAATCTGAAAAAATTGCAGCCCTTCGTAAAGGTAAGCCGATGGGGAGCAAACAATGGGGTTCGTCGCAGACCATGGTGAGCTGCCAATCCAAATCTGCAACTGGAAGTTTGAGGCGGGAGCATGAGTGTGTCATGTGCCTATCTGAGGAGATTTCGGTAGTTTTTCTTCCATGCGCGCATCAAGTTGTGTGTGCAGAATGCAACGAGCTCCATGAGAAACAAGGAATGAAGGATTGTCCTTCGTGTAGGGCTCCAATTCAACAGAGGATTCATGCTAAATTTGCTTGGCAATAG 2412 0.391 MDKIADSSGENKEDNVDKPFHHFIVPDDSSLSLIDFPPYELPLYEISQSSNEFDSLVVESDHHREEPEVHMHELVDWNDSFAIKVEELLLSNLQAVFKDAIEQIVELGYSEDVAEKALSRKAIYIQEGDPVSNIVNDTLNVLKGKYVATPDVLKGKDIATLDVIFENFQHMLYYTMLEMITVLREVRPSLTIGEAMWVLLMSDLNVSLACSVEDCLNVVFNGDSYISHSFTQSKSEVQRSDIISNYSSPTSHDSSPTYKKCKSEAPPLGKLQNSPNDKSYFASEVVKPHEENASLPTPTGKPPGTSGGDCKVGHCSKRHNRKEIAALRQKFLHMEKVYRARGKGGLKTGKFTSVGGLMIDKRIKPPYDIHNQQMKGDSSNTTSKQGVCASDAMCHVSTNDASILPIGSSSKTLSDTTSSPIEKPNISASETMSKPKSEPSFFDAQHILDECVGIPYDESLGMYVPRDQKDEIILKLVPRVNLLQGELQSWSSWTNQKVMQVTTRLGRLQPELKMLKNEKQEAEIDAKLFQENIVNRISEMENTMENTKKQIENTTSIAFMRDAENTLLKNELDAAKLSFQESMISHQQALEREHIALQKLESLDRENALHRDELEREKHKLSNLRQQLDKEKTLLVKVEGRLEKEITEIENILKQSASIIEERKQLAENIKVEEDKIIKKAAGNLQKYVEVIANLETHLEDLKQKSESEKIAALRKGKPMGSKQWGSSQTMVSCQSKSATGSLRREHECVMCLSEEISVVFLPCAHQVVCAECNELHEKQGMKDCPSCRAPIQQRIHAKFAWQ* 804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1688 803 Coils Coil 512 557 - -
Lan4g1688 803 Pfam Zinc finger, C3HC4 type (RING finger) 746 794 - -
Lan4g1688 803 MobiDBLite consensus disorder prediction 289 315 - -
Lan4g1688 803 MobiDBLite consensus disorder prediction 244 276 - -
Lan4g1688 803 Pfam Family of unknown function (DUF6592) 92 212 IPR046527 -
Lan4g1688 803 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 726 799 IPR013083 -
Lan4g1688 803 Coils Coil 600 669 - -
Lan4g1688 803 SUPERFAMILY RING/U-box 748 795 - -
Lan4g1688 803 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RF298-RELATED 28 801 - -
Lan4g1688 803 MobiDBLite consensus disorder prediction 405 438 - -
Lan4g1688 803 Coils Coil 685 712 - -
Lan4g1688 803 ProSiteProfiles Zinc finger RING-type profile. 749 789 IPR001841 -
Lan4g1688 803 PANTHER OS05G0141500 PROTEIN 28 801 IPR046934 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1688 Lan-Chr4 25644976 25649311 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1688 749 796 C3H Transcription Factor Family AT1G73950 43.750 6.46e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1688 - - lang:109335169 887.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan20g0206 20 1383262 1386406 Lan4g1688 4 25644976 25649311 LSH