Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1686 ATGACACTCTTCTTCTTCTTCAATCTTCTTACCCTTTTCTTTTTCACTCTCCCTTTTCATTCCCTTTCCTTAAATGCTACATGCCCTCTTAACTTCACCATCCTCACCACCCTTAGCGGTGGCGGAAGACCCTCCTCCTTTGACTCCACCACCCGCTGCCAGTTCATCCGCCAAGCCTTCCGCCTTGTCCAATCTGACTACCTCCGACGTACCACCTTCTTCCTCCCACCCCTCAACTCTTCAGACTCTTGCTGGCAAAGTTTTCAATCCTATGTTAACTCCTTTGAACCCACTTTCAATATTAGATCTTTTTGTGGTTTTGAAACTAGTTTTATCTCTCAGGGTTGCGTTAATATCACTACTAAGAGTGATTTTGAAGCTTTGGTTACTAACTCTGTGCTTCAAGATGTTAATCATAATTGCAACCAATCACTTGAGAATAATTCCCCTTGTGCACTTTGTACTACTAGTGTTTCAACTTTACCTGCTTCTGGTCCTTCCATTGGGAACCTTTCTGATTGTACTGCTTATCCTTCTGTTTATGTTGCTGCTTTCTCTAACAGGTTTGGACCCTCTGACCCTGGTACTGCTAAGTGCTTGTTCTCCCTTGATTTTTCATCTGAGGGTTCATCTGGTGGTAAGAAAAAGGTTGTTATTGTTGTTGTTTCTGTTGTTTGTGTCTTTGTTTTGTTTTTCGTGATTGTTGGGTTTTTTGGGTATTGGAAATTGAAAAGGAAGAGAAGGGGTATGGGTGGAAATAATACTGAAATGGATTTGGGTTCTGGGTTGGATTCAATGGACCAGAGTACTACTTTGATTAGGTTTACTATTGATGATGTTAAGAAGTCAACTAAGAATTTTCATAGGGATAATATAATTGGGAGAGGGGGTTATGGGAATGTGTATAGAGGGGTGATTTCTGATGGGAGTGAGGTTGCGTTGAAGCGGTTTAAGAATTGTTCGGCTGCTGGTGATGCGAGCTTCACTCATGAAGTTGAGGTCATTGCGAGTATCAGGCATGTGAACCTTGTTGCTCTGAGAGGTTATTGTTCTGCAACGACTAAATATGAAGGTTACCAGAGGATTATTGTTACAGATTTGATGAAAAATGGGAGCCTTCATGATCATTTGTTTGGTTCTATGGGGATCAAACTCAGTTGGCCAACTCGTCAACAGATTGCGCTAGGTACTGCGAGGGGATTGGCTTATTTACATTATGGAGCTCAGCCTTCGATCATTCATAGGGATATTAAAGCTAGTAATATACTTTTGGATGATAGGTTTGAAGCTAAGGTTGCAGATTTTGGATTAGCAAAGTTCAACCCAGAGGGAATGACTCATATGAGCACAAGGGTGGCTGGAACAATGGGGTATGTTGCTCCTGAGTATGCATTGTATGGGCAATTGACGGAGAGAAGTGATGTTTTTAGTTTCGGTGTTGTGCTTCTTGAGCTTCTGAGTGGGAGGAAGGCTCTTCAGACGGACAATGATGGCCAACCCTCGGCCTTAACTGATTGGGCTTGGTCATTGGTTAGAACAGGTAGAGCTTTGGATGTGGTTGAAGATGGCATGCCAGAACCTGGTCCACAACAAGTCCTTGAGAAGTATGTGTTAATTGCTGTACTTTGCTCTCATCCACAGTTATATGCTAGGCCAACAATGGATCAGGTTGTTAAAATGATGGAAACAGCCGATGAATCAGTGCCTTCGATACCGGAACGGCCAATCCCATTTGTTGCTGGGAGGCTTGATATTGAGAGAACTGTGAGCATGAGTGGTTCTGGTCAGCTATCTAGTCCGACCGGTTATCAACCATATACATTGGAAAGTGATCCACATTCTTCTAATTCGAATTCTAAGGAAGAAGGAAGCTCAAGCCCCAAGATTTTGAGTACCTATTGA 1902 0.4269 MTLFFFFNLLTLFFFTLPFHSLSLNATCPLNFTILTTLSGGGRPSSFDSTTRCQFIRQAFRLVQSDYLRRTTFFLPPLNSSDSCWQSFQSYVNSFEPTFNIRSFCGFETSFISQGCVNITTKSDFEALVTNSVLQDVNHNCNQSLENNSPCALCTTSVSTLPASGPSIGNLSDCTAYPSVYVAAFSNRFGPSDPGTAKCLFSLDFSSEGSSGGKKKVVIVVVSVVCVFVLFFVIVGFFGYWKLKRKRRGMGGNNTEMDLGSGLDSMDQSTTLIRFTIDDVKKSTKNFHRDNIIGRGGYGNVYRGVISDGSEVALKRFKNCSAAGDASFTHEVEVIASIRHVNLVALRGYCSATTKYEGYQRIIVTDLMKNGSLHDHLFGSMGIKLSWPTRQQIALGTARGLAYLHYGAQPSIIHRDIKASNILLDDRFEAKVADFGLAKFNPEGMTHMSTRVAGTMGYVAPEYALYGQLTERSDVFSFGVVLLELLSGRKALQTDNDGQPSALTDWAWSLVRTGRALDVVEDGMPEPGPQQVLEKYVLIAVLCSHPQLYARPTMDQVVKMMETADESVPSIPERPIPFVAGRLDIERTVSMSGSGQLSSPTGYQPYTLESDPHSSNSNSKEEGSSSPKILSTY* 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1686 633 SMART serkin_6 287 561 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan4g1686 633 ProSiteProfiles Protein kinase domain profile. 287 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan4g1686 633 Pfam Protein kinase domain 287 559 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan4g1686 633 ProSitePatterns Protein kinases ATP-binding region signature. 293 315 IPR017441 GO:0005524
Lan4g1686 633 SUPERFAMILY Protein kinase-like (PK-like) 269 578 IPR011009 -
Lan4g1686 633 PANTHER RECEPTOR-LIKE KINASE IN IN FLOWERS PROTEIN 17 617 - -
Lan4g1686 633 MobiDBLite consensus disorder prediction 590 633 - -
Lan4g1686 633 Pfam SPARK 25 161 IPR043891 -
Lan4g1686 633 CDD STKc_IRAK 293 562 - -
Lan4g1686 633 ProSitePatterns Serine/Threonine protein kinases active-site signature. 412 424 IPR008271 GO:0004672|GO:0006468
Lan4g1686 633 Gene3D Phosphorylase Kinase; domain 1 256 366 - -
Lan4g1686 633 PANTHER OS01G0253100 PROTEIN 17 617 IPR045271 GO:0004714|GO:0006468
Lan4g1686 633 Gene3D Transferase(Phosphotransferase) domain 1 368 571 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1686 Lan-Chr4 25634466 25636535 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1686 4 619 Receptor kinase-like Gene Family AT2G48010 61.997 0.0 781
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Lan4g1686 Pkinase 2.3e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1686 - - gmx:100800760 893.264
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g1686 4 25634466 25636535 Lan4g1686 4 25634466 25636535 ECH
Lan8g0668 8 8867953 8869897 Lan4g1686 4 25634466 25636535 LSH
Lan20g0208 20 1396688 1398817 Lan4g1686 4 25634466 25636535 LSH