Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1674 ATGTCATTTAGGAAAGGATTTGAGGTGTTTGGGTATGGATTGAGATCTAAATCACAGACACAGCGTGTTTCTAGTGATGTCAATTGTAGTTTGGTTGTGGTTGATGGATTGAAGCAGAGTTGTTGGGCTAATATGCCTACTGAATTGTTGAGAGATGTGCTCATCAGAATTGAGGCCTCTCAAGTTACATGGCCTTCTCGAAAACATGTCGTGGCGTGCGCCGGAGTTTGCCGCAGTTGGAGACAAATCATTAAAGAAATTGTTAAAGCTCCTCAGCTATCCACTAATTTGACATTCCCTATTTCCTTGAAGCAGCCTGGTCCAAGGGGCTCTCTTATTCAGTGCTACATTAAACGAAACCGCAGTAATCAAATATATTATCTGTTCCTTAGTTTAAACCAAGCCTCAACTGATGATGGCAAGTTCCTTCTTGCTGCACGCAAGTGTCGGCGTGCAACTCACACAGACTATATCATCTCTCTAAACTACGATGATGTATCAAGAGGCAGCAACACCTATATTGGGAAGTTGAGATCCAACTTTCTGGGTACCAAATTCACAGTGTATGATGCACATCCTCCTATTTGTGGAGCCAAAGTTGCAAAGTCTCGTTCCACCAGGCTAGTTAGTTCCAAGCAAGTCTCTCCGAGAGTTCCTGCTGAAAACTATCCTGTTGCACGTGTATCATATGATCTGAATGTTTTGGGTTCCAGAGGCCCCAGGATAATGCAATGCGTTATGGATGCCATCCCTGCTTCAGCTGTTGAACCCGGAGGTGTAGCCCCTACACAGACTCAATTTCTCCATAGCAGAATTGATACTTCTCCATCTATCCCTTTCTTTAGATCAAAATCAACCCGCATGGAAAATCTCCAATCATTGCCTTTGACTTCTCAAAATGAGGGAACACTAGTATTACGGAACAAGTCTCCTCGGTGGCATGAACAACTCCAATGCTGGTGTCTGAACTTCAATGGACGAGTAACAGTTGCTTCAGTGAAAAATTTTCAGCTGGTTGCATCTCCTAAAAATGGGGTTTCTGAGCAGGCTCAAGAAACTGTTATTCTACAGTTTGGAAAAGTTGGAAAGGACGTATTCACCATGGATTACCAGTATCCACTCTCTGCCTTCGAAGCATTTGCAATATGCCTTAGCAGCTTTGACACCAAGATTGCTTGTGAATGA 1185 0.4329 MSFRKGFEVFGYGLRSKSQTQRVSSDVNCSLVVVDGLKQSCWANMPTELLRDVLIRIEASQVTWPSRKHVVACAGVCRSWRQIIKEIVKAPQLSTNLTFPISLKQPGPRGSLIQCYIKRNRSNQIYYLFLSLNQASTDDGKFLLAARKCRRATHTDYIISLNYDDVSRGSNTYIGKLRSNFLGTKFTVYDAHPPICGAKVAKSRSTRLVSSKQVSPRVPAENYPVARVSYDLNVLGSRGPRIMQCVMDAIPASAVEPGGVAPTQTQFLHSRIDTSPSIPFFRSKSTRMENLQSLPLTSQNEGTLVLRNKSPRWHEQLQCWCLNFNGRVTVASVKNFQLVASPKNGVSEQAQETVILQFGKVGKDVFTMDYQYPLSAFEAFAICLSSFDTKIACE* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1674 394 PANTHER TUBBY-RELATED 4 393 - -
Lan4g1674 394 Pfam F-box domain 42 88 IPR001810 GO:0005515
Lan4g1674 394 PANTHER TUBBY-LIKE F-BOX PROTEIN 3-RELATED 4 393 - -
Lan4g1674 394 SUPERFAMILY Tubby C-terminal domain-like 92 394 IPR025659 -
Lan4g1674 394 Gene3D Tubby Protein; Chain A 99 394 IPR025659 -
Lan4g1674 394 ProSitePatterns Tub family signature 2. 379 394 IPR018066 -
Lan4g1674 394 Pfam Tub family 103 389 IPR000007 -
Lan4g1674 394 PRINTS Tubby superfamily signature 157 173 IPR000007 -
Lan4g1674 394 PRINTS Tubby superfamily signature 173 197 IPR000007 -
Lan4g1674 394 PRINTS Tubby superfamily signature 222 249 IPR000007 -
Lan4g1674 394 PRINTS Tubby superfamily signature 306 323 IPR000007 -
Lan4g1674 394 PRINTS Tubby superfamily signature 324 340 IPR000007 -
Lan4g1674 394 PRINTS Tubby superfamily signature 351 370 IPR000007 -
Lan4g1674 394 PRINTS Tubby superfamily signature 372 394 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1674 Lan-Chr4 25561431 25564487 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1674 4 394 TUB Transcription Factor Family AT2G47900 74.177 0.0 580
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Lan4g1674 Tub 5.5e-109 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1674 K19600 - gmx:100809257 689.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g1674 4 25561431 25564487 Lan4g1674 4 25561431 25564487 ECH