Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1673 ATGCAGCCTGGTCCAAGGGGCTCTCTTATTCAGTGCTACATTAAACGAAACCGCAGTAATCAAATATATTATCTGTTCCTTAGTTTAAACCAAGCCTCAACTGATGATGGCAAGTTCCTTCTTGCTGCACGCAAGTGTCGGCGTGCAACTCACACAGACTATATCATCTCTCTAAACTACGATGATGTATCAAGAGGCAGCAACACCTATATTGGGAAGTTGAGATCCAACTTTCTGGGTACCAAATTCACAGTGTATGATGCACATCCTCCTATTTGTGGAGCCAAAGTTGCAAAGTCTCGTTCCACCAGGCTAGTTAGTTCCAAGCAAGTCTCTCCGAGAGTTCCTGCTGAAAACTATCCTGTTGCACGTGTATCATATGATCTGAATGTTTTGGGTTCCAGAGGCCCCAGGATAATGCAATGCGTTATGGATGCCATCCCTGCTTCAGCTGTTGAACCCGGAGGTGTAGCCCCTACACAGACTCAATTTCTCCATAGCAGAATTGATACTTCTCCATCTATCCCTTTCTTTAGATCAAAATCAACCCGCATGGAAAATCTCCAATCATTGCCTTTGACTTCTCAAAATGAGGGAACACTAGTATTACGGAACAAGTCTCCTCGGTGGCATGAACAACTCCAATGCTGGTGTCTGAACTTCAATGGACGAGTAACAGTTGCTTCAGTGAAAAATTTTCAGCTGGTTGCATCTCCTAAAAATGGGGTTTCTGAGCAGGCTCAAGAAACTGTTATTCTACAGTTTGGAAAAGTTGGAAAGGACGTATTCACCATGGATTACCAGTATCCACTCTCTGCCTTCGAAGCATTTGCAATATGCCTTAGCAGCTTTGACACCAAGATTGCTTGTGAATGA 876 0.4372 MQPGPRGSLIQCYIKRNRSNQIYYLFLSLNQASTDDGKFLLAARKCRRATHTDYIISLNYDDVSRGSNTYIGKLRSNFLGTKFTVYDAHPPICGAKVAKSRSTRLVSSKQVSPRVPAENYPVARVSYDLNVLGSRGPRIMQCVMDAIPASAVEPGGVAPTQTQFLHSRIDTSPSIPFFRSKSTRMENLQSLPLTSQNEGTLVLRNKSPRWHEQLQCWCLNFNGRVTVASVKNFQLVASPKNGVSEQAQETVILQFGKVGKDVFTMDYQYPLSAFEAFAICLSSFDTKIACE* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1673 291 ProSitePatterns Tub family signature 2. 276 291 IPR018066 -
Lan4g1673 291 Gene3D Tubby Protein; Chain A 1 291 IPR025659 -
Lan4g1673 291 PRINTS Tubby superfamily signature 54 70 IPR000007 -
Lan4g1673 291 PRINTS Tubby superfamily signature 70 94 IPR000007 -
Lan4g1673 291 PRINTS Tubby superfamily signature 119 146 IPR000007 -
Lan4g1673 291 PRINTS Tubby superfamily signature 203 220 IPR000007 -
Lan4g1673 291 PRINTS Tubby superfamily signature 221 237 IPR000007 -
Lan4g1673 291 PRINTS Tubby superfamily signature 248 267 IPR000007 -
Lan4g1673 291 PRINTS Tubby superfamily signature 269 291 IPR000007 -
Lan4g1673 291 SUPERFAMILY Tubby C-terminal domain-like 1 291 IPR025659 -
Lan4g1673 291 PANTHER TUBBY-LIKE F-BOX PROTEIN 3-RELATED 2 290 - -
Lan4g1673 291 Pfam Tub family 2 286 IPR000007 -
Lan4g1673 291 PANTHER TUBBY-RELATED 2 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1673 Lan-Chr4 25555829 25557694 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1673 2 291 TUB Transcription Factor Family AT2G47900 76.792 1.72e-158 446
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Lan4g1673 Tub 1.9e-109 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1673 K19600 - lang:109346596 588.186