Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1652 ATGGCAGCATCATCTTCCTCAGCATCGCTCTTTGGGTTTAGAGAAGAGGACCAGAATCAGATGAATCAACAACATTCATCTTCAGCAACTCCAGCTGCACCACCCCAGAAGAAGAAGAGAAACCAACCTGGAACTCCAAATCCAGATGCGGAGGTGATAGCATTATCTCCAAAGACCCTAATGGCAACAAACAGGTTTATATGTGAAGTGTGCAATAAAGGCTTCCAAAGAGAGCAAAACTTACAGCTACACAGAAGAGGACACAACCTGCCTTGGAAGCTTAAGCAGAAGAGTACAAAAGAGCCAAGGAGAAAGGTTTATCTGTGCCCTGAGCCCACTTGTGTCCATCATGACCCTTCAAGGGCTCTTGGTGACCTCACTGGGATTAAGAAGCATTACTCTCGCAAGCATGGTGAGAAGAAATGGAAGTGTGATAAGTGCTCCAAAAAGTATGCTGTTCAATCTGATTGGAAAGCCCATTCTAAGACTTGTGGCACTAGAGAATATAGATGTGACTGTGGCACTCTCTTCTCCAGAAGGGACAGTTTCATCACCCACAGGGCCTTTTGTGATGCACTAGCTCAAGAGAGTGTAAGACAGCCACCAAACCTGAGCACTGGCATTGGCAGCACCAGCCACCTCTATGGTAGTAATAATAGTAACATGGCATTGGCCTTATCTCAAGTGACTCCTCAAATGTCCAACATGCAAGACCATTTCAATAACGAACAGAGATCTGTTGTCCCTACTGATATATTGGGCCTTGGTGGTAATACCGGTCGGACCGGTCATTTTGACCATATCCTCCATCCATCTTTGCAGGCCGGTTCATCATCATTTAAGCCTTCACAGAAAACTATGCAGAACTCAGCAGTTTCATTCTTCATGGCTGCTGATAATTCAAACCAAAACTACCATCACCATGACCAGTCTCAACAACAAGGGATGGTGCAACAGAACAAAGATCCATTCCAAGGACTCATGCATTTATCTCATGATGGAGTCAACCATCATCATAACAGTTCCTCTTCACCTGGTGGATCAGCAAACTTCTTCAACCATCCCTTTCTTTCAAATAATACCAGCAATAATAGCAGCAACAACTCTTTCTCTGAACATTTCAACAATGCCAATGGAAACGTTGGAGGAGGCAATGAAGGAATCAACTTATTCAGTACAGGTAATCCTATGGTGGGTGGTGGTGGTCATCATCAGCAAACAATGACTTCAAGTGCACCTTCTCTATTCAGCACATCTCTCCAAAGCAACAATAGTGCTGCCAATACTCATCACATGTCTGCAACTGCACTGCTTCAGAAAGTTGCTCAAATGAGTGCAATTTCCAGCAACAGCACCAACTCACTTCTAAAAAGCTTCGGAAGCAGCATTTCCTCTAGCTGCGGATCCAAAGCTGAACAGCATAGGCAAATCCATGTTCCTCCTCCTCCTCCTCCTCCTTCTTCTGCAAACTATAACAACATCTTCGGTGGAAATGAAAGCAGCAACAATAACCTTCAAGACCTGATGAACTCGTTTGCAGCCAGTGGAAACACTTCAATATTCGAACATGGGGGTTCAGTAGGGCTCACTGGGTTTGAACCATATGATCATAACTCAAACAGAAGGGAACAACCAAAACTGCATGGAGTGAACATTGGATCATCAGGCTCAGATGATAGACTCACTCGTGATTTTCTTGGTGTTGGTCAAATAGTGAGAAACATGAGTGGTGGAAGTGGAGGGCTTGTTTCACAAAGGGAACAACATGGCTTCAAATTAAGCACTACTTTAGAGACAGAAAGGAACAACAATGCTGTGCCGTCAAGGCAAACTTTTGGAGGTGGTGGAGGGAATTTTCAGTGA 1863 0.4434 MAASSSSASLFGFREEDQNQMNQQHSSSATPAAPPQKKKRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSTKEPRRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESVRQPPNLSTGIGSTSHLYGSNNSNMALALSQVTPQMSNMQDHFNNEQRSVVPTDILGLGGNTGRTGHFDHILHPSLQAGSSSFKPSQKTMQNSAVSFFMAADNSNQNYHHHDQSQQQGMVQQNKDPFQGLMHLSHDGVNHHHNSSSSPGGSANFFNHPFLSNNTSNNSSNNSFSEHFNNANGNVGGGNEGINLFSTGNPMVGGGGHHQQTMTSSAPSLFSTSLQSNNSAANTHHMSATALLQKVAQMSAISSNSTNSLLKSFGSSISSSCGSKAEQHRQIHVPPPPPPPSSANYNNIFGGNESSNNNLQDLMNSFAASGNTSIFEHGGSVGLTGFEPYDHNSNRREQPKLHGVNIGSSGSDDRLTRDFLGVGQIVRNMSGGSGGLVSQREQHGFKLSTTLETERNNNAVPSRQTFGGGGGNFQ* 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1652 620 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1 579 - -
Lan4g1652 620 Pfam Zinc-finger double-stranded RNA-binding 66 88 IPR022755 -
Lan4g1652 620 Gene3D Classic Zinc Finger 120 199 - -
Lan4g1652 620 MobiDBLite consensus disorder prediction 1 43 - -
Lan4g1652 620 MobiDBLite consensus disorder prediction 601 620 - -
Lan4g1652 620 ProSitePatterns Zinc finger C2H2 type domain signature. 68 88 IPR013087 -
Lan4g1652 620 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 579 - -
Lan4g1652 620 MobiDBLite consensus disorder prediction 1 51 - -
Lan4g1652 620 Gene3D Classic Zinc Finger 45 113 - -
Lan4g1652 620 SUPERFAMILY beta-beta-alpha zinc fingers 65 162 IPR036236 -
Lan4g1652 620 SMART c2h2final6 107 137 IPR013087 -
Lan4g1652 620 SMART c2h2final6 142 162 IPR013087 -
Lan4g1652 620 SMART c2h2final6 66 88 IPR013087 -
Lan4g1652 620 MobiDBLite consensus disorder prediction 466 489 - -
Lan4g1652 620 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 88 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1652 Lan-Chr4 25396371 25402690 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1652 36 580 IDZ Gene Family AT2G02070 49.404 7.29e-138 413
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan4g1652 zf-C2H2_jaz 3.8e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1652 K25870 - gmx:100786121 654.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0647 8 8704770 8711113 Lan4g1652 4 25396371 25402690 LSH
Lan20g0238 20 1591019 1597238 Lan4g1652 4 25396371 25402690 LSH