Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1649 ATGGGTAGTTGTGGAAGAGAAGGAGCAGTGAGACAGTATATAAGGTCCAAGGTACCTCGTTTAAGGTGGACTCATGAGCTTCATCGTTGCTTTGTTCATGCCATTGAAAGACTCGGTGGTCATCATAAGGCTACTCCTAAGCTTGTTCTTCAGTTAATGGATGTCAAAGGGCTCACCATTTCACATGTCAAGAGCCATCTTCAGATGTATAGAGGCATGAGAAGTGACTTGGGAAGACAAGGTAGAACATCCACCCAACATAGGAACCAATCTTTTGAGGACTATGATGGTTGTGTTGATGAAGTTAATGATGTTGGAGTTCTCTACCCTGTTTGCTCAAAACCCATTGCAAAAGAATCTGATTCTCTCTTCAGCAGCTACAGTAATCTCTCCCCAAAAAGAGCTAGAATCGAGACAAGGAGTTGTTGCATCTCAAAGAGCCTGCAATGCAGCCAAAGAATATGTGATGCAGTGCCAAATACGTACCAAAGCTTTTATGATATTGGAGAGAAGAAAACTGAGCCCAAAGGAATAAAGGAGAGTGGTTATTGTGTTGTTGGTGGTTCAACATGGCTGACACAACAACAACAACAACAACAACAGCAACCTCACTCACATACTCTACTACCAGATTTTGGTAACCCTACTTCATTGGAAAGTCCAAACCAAGAATCTGATTTACTCCAGGTTACTAAATTAAATGAAAGCAAGACCAGTTCACAGCCAATGAAAATATTTATGAACACTGAGAGGGCACATGGAAAAGTTGAAGATGTAGGAAGGTGTGAGTTGTCATTGTCACTCTCATTGGCAAATCCTTCACCTCAAGGGAGTAATGGTTCTTCAGCAAGTGAGATCAGTGAGGCTATTTCATCATGGTCTGGGTTCACCAATTACAAGGACTGCTATAGTTTTTCTACTGTCAAAGATAGAATTAATTTAGACCTGTCTTTAGCCCTATGTGGCAATTGA 972 0.4126 MGSCGREGAVRQYIRSKVPRLRWTHELHRCFVHAIERLGGHHKATPKLVLQLMDVKGLTISHVKSHLQMYRGMRSDLGRQGRTSTQHRNQSFEDYDGCVDEVNDVGVLYPVCSKPIAKESDSLFSSYSNLSPKRARIETRSCCISKSLQCSQRICDAVPNTYQSFYDIGEKKTEPKGIKESGYCVVGGSTWLTQQQQQQQQQPHSHTLLPDFGNPTSLESPNQESDLLQVTKLNESKTSSQPMKIFMNTERAHGKVEDVGRCELSLSLSLANPSPQGSNGSSASEISEAISSWSGFTNYKDCYSFSTVKDRINLDLSLALCGN* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1649 323 Gene3D - 18 75 - -
Lan4g1649 323 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 19 71 IPR006447 GO:0003677
Lan4g1649 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 75 IPR017930 -
Lan4g1649 323 MobiDBLite consensus disorder prediction 194 225 - -
Lan4g1649 323 SUPERFAMILY Homeodomain-like 17 72 IPR009057 -
Lan4g1649 323 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 1 323 IPR044848 GO:0003700
Lan4g1649 323 Pfam Myb-like DNA-binding domain 21 71 IPR001005 -
Lan4g1649 323 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 1 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1649 Lan-Chr4 25354015 25357433 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1649 1 77 G2-like Transcription Factor Family AT1G14600 71.951 7.67e-34 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lan4g1649 Myb_DNA-binding 7.6e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1649 - - gmx:100787188 350.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0643 8 8667365 8670567 Lan4g1649 4 25354015 25357433 LSH
Lan20g0243 20 1632659 1636271 Lan4g1649 4 25354015 25357433 LSH