Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1648 ATGGATGCTCATCATAGCAGAAGGGATCATATTCTTCCTACCCGCTTCTTCAAGTTTATTCTTAACACCAATCTACAAAAAATTAAAATACCCAACAAGTTCACAAAAATATATGGAGGTGGTATATCAAATCCAGTGTTTTTGAAGCCACCAGATGGCACTGAATGGAAAGTGCATTGGACCAAAAAGAATGGTGAGTTTTGGTTTGAAAAGGGTTGGAAAGAGTTTACTGAAAACTACTCTCTATATCATGGAGTTTTGGTGATGTTTAAATATGAAGGAACTTCCCATTTTGATGTTAACATACTTGACCATAGTAGCCTTGAAATAGATTATCCTTCCTATCATACTTGTAAAGAAGAACAGAACCTTGATCACAGTGTTCATGAATCAGTAAGGTCACCAGTACCATTAGCTTCTGCTCAACCAAGTAAGAAAAGGAAAGGTGAGGAGGCTACTCCTACAAGTTTATCAATGAATTGGCCAAGAGATCCTAGAGCACAAGTATTAGCTAAGAAATTCGTCTCAAAATCTCATAATCCTTTCTTCACAAAACTTATAAAGCCTGTTAATGTGGTGGAAAGCAGTATGAGTTTACCAAATATGGATGGTTATTTTGAGAAGAAGAACATGAATGTAACATTAGAACATGGAGAAAGATCATGGAAAGTGAAGTTGCTTGGTTCTAACAACTCTGCATGTCGCCGATTCTCTGCTGGTTGGTGCTTGTTTGCAAGTGAAAGTGAGTTGCAACCTGGAGATGTTTGCATCTTTGAACTCATTAACAGAGAAGATGTAGTGTTTAAAGTTCATGTTTTCAAAGGCTAA 828 0.3684 MDAHHSRRDHILPTRFFKFILNTNLQKIKIPNKFTKIYGGGISNPVFLKPPDGTEWKVHWTKKNGEFWFEKGWKEFTENYSLYHGVLVMFKYEGTSHFDVNILDHSSLEIDYPSYHTCKEEQNLDHSVHESVRSPVPLASAQPSKKRKGEEATPTSLSMNWPRDPRAQVLAKKFVSKSHNPFFTKLIKPVNVVESSMSLPNMDGYFEKKNMNVTLEHGERSWKVKLLGSNNSACRRFSAGWCLFASESELQPGDVCIFELINREDVVFKVHVFKG* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1648 275 PANTHER TRANSCRIPTIONAL FACTOR FAMILY PROTEIN, PUTATIVE-RELATED 12 274 - -
Lan4g1648 275 SUPERFAMILY DNA-binding pseudobarrel domain 15 113 IPR015300 -
Lan4g1648 275 Gene3D - 12 107 IPR015300 -
Lan4g1648 275 MobiDBLite consensus disorder prediction 123 159 - -
Lan4g1648 275 CDD B3_DNA 15 104 IPR003340 GO:0003677
Lan4g1648 275 Gene3D - 163 275 IPR015300 -
Lan4g1648 275 ProSiteProfiles B3 DNA-binding domain profile. 13 106 IPR003340 GO:0003677
Lan4g1648 275 SUPERFAMILY DNA-binding pseudobarrel domain 176 274 IPR015300 -
Lan4g1648 275 Pfam B3 DNA binding domain 183 274 IPR003340 GO:0003677
Lan4g1648 275 Pfam B3 DNA binding domain 23 103 IPR003340 GO:0003677
Lan4g1648 275 ProSiteProfiles B3 DNA-binding domain profile. 182 275 IPR003340 GO:0003677
Lan4g1648 275 PANTHER B3 DOMAIN-CONTAINING PROTEIN REM-LIKE 3-RELATED 12 274 IPR039218 -
Lan4g1648 275 SMART B3_2 183 274 IPR003340 GO:0003677
Lan4g1648 275 SMART B3_2 16 106 IPR003340 GO:0003677
Lan4g1648 275 CDD B3_DNA 181 274 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1648 Lan-Chr4 25338315 25339785 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1648 12 274 B3 DNA Binding Superfamily AT3G18990 26.627 4.43e-30 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lan4g1648 B3 2.3e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1648 - - lang:109346569 580.482