Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1642 ATGGATTTTGACGAATATGAATATTTAGAGAAAACTGTTGAAAATCTTGATGATATTGAAACTACTAATGGCAACGGAACTGTGAAATCTGAAGATAAAGACCGTAGTCGTCGTTCTAAGCATTCAAAATCTGGAGATGCTGCTTCTCGTGATGATGATAATGATGATAGGGTTAAACATAGAGGCTCATCGCGGCATCGATCACGGTCTAGAGATGGAGAGAAAGTGAAGGACAGGCATAGAAGCTCTGGAGGTGAGAAGGATAGGAGAAGAGATGATAAGGACAGAGAGAGACATGGAAGGGAGAGAAATAGAAGAGACCGAGGTAGCGAGAGTGAAAGGGAAAAGGAAAGGGAAAAGGAAAGGGAGAAAGAACACTCGCAGCTAAACAGAACAAAATCCGAAAGGCATCCAACTGAATTGGATGAGCGAGACCAAGAGGCGAGTCGTGGTGGCAGGGACTATAGAGATAGGGTTAGAATCCGCGATAGGGATTACAGAGGAGAAAGAGAAAGTGTGAGAGAACCTTGGGAACGAGATAGAGAAAACAGACGACATAAAGAGAAAAAGGATGACGCAGCAGAACCTGAGGCTGATCCTGAACGTGATCAAAGAACTGTGTTTGCTTATCAGATTTCTCTGAAAGCGGATGAAAGAGATGTGTATGAATTATTCTCACGGGCTGGCAAGGTGCGAGATGTTCGTTTGATTATGGACCGCAATTCGAGACGCTCTAAGGGTTTTGGGTACATTGAGTTCTATGATGCAATGTCTGTCCCCATGGCAATAGCACTTTCTGGCCAACCTCTTCTTGGTCAACCAGTGATGGTGAAGCCATCTGAAGCGGAAAAGAATTTGGTTCAGTCTACAGCATCTGTTGCTGGTGGAACCACTGGAGGTATTGGCCCTTATTCTGGGGGTGCAAGAAGGCTGTATGTTGGCAACCTGCATTTCAGTATGACCGAAGCTGATCTCCGTTCGGTCTTCGAAGCATTTGGTCAGGTTGAGCTTGTTCAGCTACCTCCTGATGAAAGTGGGCACTGCAAAGGTTTTGGCTTCGTGCAGTTTGCACGCCTTGAAGATGCACGAAATGCCCAGCAGTTGAATGGTTTGGAAATTGGCGGCAGGACAATAAAGGTATCAGCTATTACTGCTGATCAATCTGGAATGCTAGAAGTAGGGGGAAATACTGGTGAGTTTGATGATGAAGAAGGCGGTGGCTTGTATCTGAATGCATCTTCTCGAGCCTTACTCATGCAGAAGTTGGATCGCAGTGGCACCACATCCAGCATGGTTGGATCTATTGGTAATTCTGCTGTCAACAACACAGGTCTTAATCTACCAGCGTCAGGAAACATACCAGCAGCAACTCTTCTGGGAGCTGTGCCAGCGGGTTCTTCTATTCCTGCAGTACCTGGATTACCAGGTGGAGGTTTCCAATTTCCCATTGCTGCCGCCACAATTCCTTCTATTGATACTATTGGTGTTCCAAGTGAATGCTTATGGTTAAAAAATATGTTCGATCCCAATGATGAGAAGGAACCTGATTTTGATTTTGATATTAAAGAAGATGTTGAAGCAGAATGCTCTAAGTTTGGCAAGTTAAAGCACATATATGTTGATAAGAAGAGTGCTGGTTTTGTTTTCTTACGATTTGAAAATACTCAAGCGGCTATAAGTGCACAAGGTGCCTTGCATGGACGATGGTTTGCTGGGAAGATGATCACTGCTAGCTTCATGGTTCCCCAATCATATGAAGATAAATTCCCAGATAGCAGATGA 1782 0.4444 MDFDEYEYLEKTVENLDDIETTNGNGTVKSEDKDRSRRSKHSKSGDAASRDDDNDDRVKHRGSSRHRSRSRDGEKVKDRHRSSGGEKDRRRDDKDRERHGRERNRRDRGSESEREKEREKEREKEHSQLNRTKSERHPTELDERDQEASRGGRDYRDRVRIRDRDYRGERESVREPWERDRENRRHKEKKDDAAEPEADPERDQRTVFAYQISLKADERDVYELFSRAGKVRDVRLIMDRNSRRSKGFGYIEFYDAMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTASVAGGTTGGIGPYSGGARRLYVGNLHFSMTEADLRSVFEAFGQVELVQLPPDESGHCKGFGFVQFARLEDARNAQQLNGLEIGGRTIKVSAITADQSGMLEVGGNTGEFDDEEGGGLYLNASSRALLMQKLDRSGTTSSMVGSIGNSAVNNTGLNLPASGNIPAATLLGAVPAGSSIPAVPGLPGGGFQFPIAAATIPSIDTIGVPSECLWLKNMFDPNDEKEPDFDFDIKEDVEAECSKFGKLKHIYVDKKSAGFVFLRFENTQAAISAQGALHGRWFAGKMITASFMVPQSYEDKFPDSR* 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1642 593 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 309 385 IPR000504 GO:0003723
Lan4g1642 593 CDD RRM1_RBM39_like 206 278 - -
Lan4g1642 593 Gene3D - 300 388 IPR012677 -
Lan4g1642 593 Gene3D - 137 289 IPR012677 -
Lan4g1642 593 SMART rrm2_1 310 381 IPR003954 GO:0003676
Lan4g1642 593 SMART rrm2_1 500 578 IPR003954 GO:0003676
Lan4g1642 593 Gene3D - 494 593 IPR012677 -
Lan4g1642 593 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 400 517 IPR029123 -
Lan4g1642 593 MobiDBLite consensus disorder prediction 13 156 - -
Lan4g1642 593 CDD RRM3_RBM39_like 498 580 - -
Lan4g1642 593 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 205 282 IPR000504 GO:0003723
Lan4g1642 593 MobiDBLite consensus disorder prediction 27 156 - -
Lan4g1642 593 PANTHER CC1-LIKE SPLICING FACTOR 1 589 - -
Lan4g1642 593 MobiDBLite consensus disorder prediction 169 204 - -
Lan4g1642 593 SUPERFAMILY RNA-binding domain, RBD 198 307 IPR035979 GO:0003676
Lan4g1642 593 SMART rrm1_1 310 381 IPR000504 GO:0003723
Lan4g1642 593 SMART rrm1_1 500 578 IPR000504 GO:0003723
Lan4g1642 593 SMART rrm1_1 206 278 IPR000504 GO:0003723
Lan4g1642 593 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 589 - -
Lan4g1642 593 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 523 575 IPR000504 GO:0003723
Lan4g1642 593 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 215 274 IPR000504 GO:0003723
Lan4g1642 593 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 311 379 IPR000504 GO:0003723
Lan4g1642 593 TIGRFAM SF-CC1: splicing factor, CC1-like family 92 591 IPR006509 GO:0003723|GO:0005634|GO:0006397
Lan4g1642 593 SUPERFAMILY RNA-binding domain, RBD 309 586 IPR035979 GO:0003676
Lan4g1642 593 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 499 582 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1642 Lan-Chr4 25305840 25313196 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1642 207 381 Eukaryotic Initiation Factors Gene Family AT4G34110 26.984 9.65e-06 46.6