Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1639 ATGGGTGTGGCTCAGAACAATGTTGATGTGGAGGATGGTAACTTGGAGATTGGAATGGAATACAGAACTGTATCCGGGGTTGCTGGACCGTTGGTTATTCTTGATAAAGTCAAGGGACCTAAATATCAAGAGATTGTTAATATTCGTTTGGGAGATGGAAGTACTCGTCGTGGACAAGTTCTAGAGGTTGATGGTGAAAGGGCTGTTGTTCAGGTCTTTGAAGGTACTTCTGGTATTGACAATAAATTTACAACCGTGCAATTTACTGGAGAGGTGTTAAAGACTCCTGTTTCACTGGACATGCTTGGCCGCATATTTAATGGTTCTGGAAAACCAATTGACAATGGCCCACCGATTTTGCCGGAGGCTTACTTGGATATATCAGGAAGTTCCATTAACCCTAGTGAGAGAACTTATCCTGAGGAAATGATACAGACAGGAATATCTACGATTGATGTCATGAATTCTATTGCTAGAGGTCAAAAGATCCCTCTATTCTCAGCTGCTGGTCTCCCCCATAATGAAATTGCTGCTCAGATATGTCGTCAGGCTGGCTTAGTGAAGCGATTAGAGAAGTCTGATAATCTTTTGGAGGGTGGTGAAGGGGACAATTTTGCCATTGTGTTTGCAGCTATGGGAGTTAACATGGAAACTGCACAGTTTTTTAAACGTGACTTTGAGGAGAATGGCTCAATGGAGAGAGTGACCCTCTTCCTTAATCTGGCTAATGATCCTACAATTGAGCGTATCATCACTCCTCGTATTGCTCTTACTACTGCTGAATACTTGGCTTATGAATGTGGCAAACACGTTCTTGTGATCCTCACAGATATGAGTTCTTATGCTGATGCTCTTCGTGAGGTGTCTGCTGCCCGAGAAGAAGTACCAGGAAGACGTGGTTATCCTGGTTACATGTATACCGATCTTGCAACAATTTATGAACGTGCAGGAAGAATTGAAGGGCGAACAGGCTCTATTACACAAATTCCAATTCTAACCATGCCCAATGATGATATTACGCATCCAACTCCTGATCTTACAGGATATATCACTGAGGGCCAGATATACATTGACAGGCAGTTGCATAATAGACAGATATACCCACCAATCAATGTCCTTCCTTCTCTATCTCGGTTGATGAAGAGTGCTATTGGTGAGGGAATGACCAGAAAGGATCATGCTGATGTGTCTAACCAGCTGTATGCAAATTATGCCATTGGAAAGGATGTCCAGGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCATCTGAGGACTTGTTGTATCTGGAATTTTTGGACAAGTTCGAAAGGAAGTTTGTTGCCCAGGGAGCTTATGACACCCGCAATATTTTCCAGTCTCTAGATCTTGCATGGACTTTACTTCGGATCTTCCCTCGTGAGCTCCTTCACCGTATTCCAGCCAAGACTCTTGACGCGTATTACAGCCGAGATGCCAGTAACTGA 1467 0.4335 MGVAQNNVDVEDGNLEIGMEYRTVSGVAGPLVILDKVKGPKYQEIVNIRLGDGSTRRGQVLEVDGERAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKSDNLLEGGEGDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRIEGRTGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHADVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDAYYSRDASN* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1639 488 CDD V_A-ATPase_B 92 379 - -
Lan4g1639 488 PANTHER V-TYPE PROTON ATPASE SUBUNIT B1-RELATED 3 488 - -
Lan4g1639 488 CDD ATP-synt_V_A-type_beta_N 20 91 - -
Lan4g1639 488 PANTHER V-TYPE PROTON ATPASE SUBUNIT B 3 488 IPR022879 -
Lan4g1639 488 Pfam ATP synthase alpha/beta family, beta-barrel domain 24 90 IPR004100 GO:0046034|GO:1902600
Lan4g1639 488 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 147 377 IPR000194 GO:0005524
Lan4g1639 488 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 94 383 IPR027417 -
Lan4g1639 488 TIGRFAM V-ATPase_V1_B: V-type ATPase, B subunit 20 486 IPR005723 GO:0033180|GO:0046961|GO:1902600
Lan4g1639 488 CDD ATP-synt_V_A-type_beta_C 387 481 - -
Lan4g1639 488 PIRSF V-ATPsynth_beta/V-ATPase_B 11 488 IPR022879 -
Lan4g1639 488 Hamap V-type ATP synthase beta chain [atpB]. 18 486 IPR022879 -
Lan4g1639 488 Gene3D - 29 488 - -
Lan4g1639 488 ProSitePatterns ATP synthase alpha and beta subunits signature. 368 377 IPR020003 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1639 Lan-Chr4 25277608 25283574 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1639 1 488 Primary Pumps ATPases(2) AT4G38510 95.697 0.0 960
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1639 K02147 - pop:7474990 941.414
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan20g0250 20 1699116 1705045 Lan4g1639 4 25277608 25283574 LSH