Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lan4g1630 | ATGGTAATTCAGGTTAACAACCACAGCATCGGCACCGTAATGCATCACCATGCCACGGCGGCGCAATCCAGGCGACAGCGGCAGAAGCTAGAAGTGTACAATGAGGTTCTCCAACGACTCAAGGATTCTGGTAACGAAGAAGCTTTGCAAACTGGCTTCGATGATTTGCTTTGGGCTCACTTTAACCGCCTCCCTACACGGTATGCGTTGGATGTGAATGTGGAAAGGGCTGAAGATGTTCTTATGCATAAGAGATTACTGCATTTGGCTCATGATCCTGCTAATAGGCCTGCAATTGAAGTTCGATTAGTCCAGGTTCATCCCATATCAAGTGGAAACTCAGCTGACTCTGTCCTATCAGATGCTCCTGGGAATGCATCTGGTCATAGTTCTTCACAGTTCTCAAACAGACAGGGTTTACATCCACCTCCTGCTTTTGGTTCTTCTCATAATCTTGAAGCACTAGCACTTGAAGCAAATAAATCAGAAGACATGGAGGAGGAACAATCTGTGCATGATAGTGCAAACTATTCACGGCCCATGCATGAAATTACCTTCTCAACAGATGACAAGCCAAAGCTTCTTAGTCAGGTCTTGTTGCTTCTGCAGTTAACTGCTTTGCTTGCTGAAATTGAACTGGACATCCAAGAGGCGCATGTCTTCTCCACAACCGACGGTTACTCATTAGATGTGTTTGTTGTTGAAGGATGGCCCTATGAGGAAACAGAGAAGCTTAGAGAAACTTTGGCAAAACAAGTCGTAATGATTGAGTGCTTTCAGAGGCAGGCAAGGTCGAGTCAGCAATCAGAATCTTCTGCTGAGAAACCTGATCAAGCAGAGGTGAAATCTGAACCGGACCAGTTGACAATACCTAATGACGGGATGGATGTTTGGGAAATAGATCCTAAACATTTGAATTATGGAACTCAAGTCACATCTGGGTCATACAGTGAACTATTTAAAGGTGTATATTGCAGCCAAGAAGTAGCAATTAAAGTTCTCAAGCCTGAGCATGTAAGTTCAGATTTGCAGAGAGAGTTCGCGCAGGAAGTTTATATCATGAGAAAGGTTCGACACAAGAATGTTGTACAATTCATAGGAGCATGCACAAAACCCCCACGCTTGTGCATAGTTACAGAATTTATGTCCGGTGGTAGTGTGTATGACTACCTGCATAAGCAGAAGGGTTGCTTTAAATTTCCTACCCTGCTCAGAGTTGCAAATGATGTTTCTAAAGGAATGAACTACTTGCATCAACATAACATAATCCATAGAGACTTGAAGGGTGCCAATCTTTTGATGGATGAAAACAGTGTTGTAAAGGTTGCTGATTTTGGGGTAGCTAGAGTGAAAGCTCAATCTGGAGTTATGACAGCAGAAACTGGAACGTATCGATGGATGGCTCCTGAGGTTATAGAACACAAGCCGTATGATCACAAGGCTGATGTATTTAGTTTTGGAGTTGTTTTATGGGAATTGCTAACTGGAAAGCTTCCATACGAATACCTGACCCCTCTCCAGGCTGCTATAGGAGTGGTTCAAAAGGGTCTACGACCAACCATCCCTAAGAACACCCATCCAAAGTTTGTTGAGCTTCTTCAGAGGTCTTGGCAGCAAGATCCAGCATTGAGACCCGATTTCTCTGAGATTATTGATATCCTGCAGCAGTTAGCCAAGGAGGTTGGAGATGAAGGAGAGGAGCGGCACAGGGATAAATCGGGAGGATTTCTGTCTGTCCTCAGACGAGGTCATCACTAA | 1758 | 0.4414 | MVIQVNNHSIGTVMHHHATAAQSRRQRQKLEVYNEVLQRLKDSGNEEALQTGFDDLLWAHFNRLPTRYALDVNVERAEDVLMHKRLLHLAHDPANRPAIEVRLVQVHPISSGNSADSVLSDAPGNASGHSSSQFSNRQGLHPPPAFGSSHNLEALALEANKSEDMEEEQSVHDSANYSRPMHEITFSTDDKPKLLSQVLLLLQLTALLAEIELDIQEAHVFSTTDGYSLDVFVVEGWPYEETEKLRETLAKQVVMIECFQRQARSSQQSESSAEKPDQAEVKSEPDQLTIPNDGMDVWEIDPKHLNYGTQVTSGSYSELFKGVYCSQEVAIKVLKPEHVSSDLQREFAQEVYIMRKVRHKNVVQFIGACTKPPRLCIVTEFMSGGSVYDYLHKQKGCFKFPTLLRVANDVSKGMNYLHQHNIIHRDLKGANLLMDENSVVKVADFGVARVKAQSGVMTAETGTYRWMAPEVIEHKPYDHKADVFSFGVVLWELLTGKLPYEYLTPLQAAIGVVQKGLRPTIPKNTHPKFVELLQRSWQQDPALRPDFSEIIDILQQLAKEVGDEGEERHRDKSGGFLSVLRRGHH* | 586 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lan4g1630 | 585 | MobiDBLite | consensus disorder prediction | 114 | 139 | - | - | |
| Lan4g1630 | 585 | MobiDBLite | consensus disorder prediction | 114 | 147 | - | - | |
| Lan4g1630 | 585 | SMART | serkin_6 | 305 | 558 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Lan4g1630 | 585 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 422 | 434 | IPR008271 | GO:0004672|GO:0006468 | |
| Lan4g1630 | 585 | MobiDBLite | consensus disorder prediction | 265 | 293 | - | - | |
| Lan4g1630 | 585 | Pfam | Protein tyrosine and serine/threonine kinase | 306 | 553 | IPR001245 | GO:0004672|GO:0006468 | |
| Lan4g1630 | 585 | Coils | Coil | 23 | 43 | - | - | |
| Lan4g1630 | 585 | PRINTS | Tyrosine kinase catalytic domain signature | 379 | 392 | IPR001245 | GO:0004672|GO:0006468 | |
| Lan4g1630 | 585 | PRINTS | Tyrosine kinase catalytic domain signature | 416 | 434 | IPR001245 | GO:0004672|GO:0006468 | |
| Lan4g1630 | 585 | PRINTS | Tyrosine kinase catalytic domain signature | 462 | 472 | IPR001245 | GO:0004672|GO:0006468 | |
| Lan4g1630 | 585 | PRINTS | Tyrosine kinase catalytic domain signature | 481 | 503 | IPR001245 | GO:0004672|GO:0006468 | |
| Lan4g1630 | 585 | PRINTS | Tyrosine kinase catalytic domain signature | 525 | 547 | IPR001245 | GO:0004672|GO:0006468 | |
| Lan4g1630 | 585 | SUPERFAMILY | Protein kinase-like (PK-like) | 289 | 554 | IPR011009 | - | |
| Lan4g1630 | 585 | Gene3D | Transferase(Phosphotransferase) domain 1 | 384 | 574 | - | - | |
| Lan4g1630 | 585 | SUPERFAMILY | ACT-like | 181 | 252 | IPR045865 | - | |
| Lan4g1630 | 585 | PANTHER | SERINE/THREONINE-PROTEIN KINASE STY46-LIKE ISOFORM X1 | 15 | 568 | - | - | |
| Lan4g1630 | 585 | PANTHER | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED | 15 | 568 | - | - | |
| Lan4g1630 | 585 | ProSiteProfiles | Protein kinase domain profile. | 305 | 558 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Lan4g1630 | 585 | Gene3D | Phosphorylase Kinase; domain 1 | 294 | 383 | - | - | |
| Lan4g1630 | 585 | CDD | STKc_MAP3K-like | 313 | 554 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lan4g1630 | Lan-Chr4 | 25201960 | 25208998 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lan4g1630 | 19 | 584 | MAP Kinase Kinase Kinase | AT4G35780 | 64.488 | 0.0 | 724 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| PK | TKL-Pl-4 | Lan4g1630 | PK_Tyr_Ser-Thr | 5.2e-70 | CL0016 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lan4g1630 | - | - | gmx:100805180 | 939.102 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Lan8g0629 | 8 | 8554645 | 8561503 | Lan4g1630 | 4 | 25201960 | 25208998 | LSH | |
| Lan20g0255 | 20 | 1739936 | 1747225 | Lan4g1630 | 4 | 25201960 | 25208998 | LSH |