Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1628 ATGCCAAAAATGAAGAGAAATGTTAAATTTACAGAAGAAAAATGCTTAATGTGCCATCAATGTCAGAGAAATGATAAAGGCGAGGTTGTGAGGTGCACACGTTGTAAGCGCAAAAGATATTGCTTGTTCTGCTTGAAAAGTTGGTATCCTGAATGGAAACATGCTGATGTTGCTGAGGCATGCCCTGTGTGCCGTGGTAATTGCAATTGCAAAGCATGCATGCGGTCGGATGCACATATTAAGAAATTGAAGAAAGATGTGGCAGATAAGAGGTATGAAGGTAATGAAGCTAATCTCTCTAAGTATGTACTGATACGTCTCATTCCATATGTAAGACGATTGAATGAAGAACAGATGATTGAGTTGGGGATAGAAGCTAAGAGACAAGGGCTCTCACTCTCAGAGCTTAATATTCAAAAGGCAGAATACTCACGGAGGAAACATGTCTCCTGTGACAACTGCAAAACATCAATATTTGATTACCACAGAAGCTGTAGAAAATGTTCTTTTCATCTTTGTCTCACCTGTTGCCATGAGCTTCGTGATGGGCAGCTTCTAGGTGGTGCAGATCCAGTTGAGTTGGGGTTCATCAAATGTAGTCTCGAGTATTTGCATGGTGGAAAAGAAAAGGAGCCTGAGATACATGAATCACCTGCTGATGCTGAGCCTGACATTCGTGGATGGTCAAGATCTGGGTGGCATGCAGAAAGTGATGGTAGTATTCCCTGTCCAAAGATCAATGATGAATGCTGCCATGGTTTTCTTGAATTGAAAAGCATATTTGGCCAGGCTTTTATTTCAGAGTTAGTATATAAAGCAGAAGAACTAGCAAAAGCATATACACTTCAAAATGCAATTGAGACTCCTGACAACTTGTGTTCTTGTCTGAAGATCAGTAGAAACACAGATGTTAGAAATAATATAAGGAAGGCAGCTTCTCGTGAAGTTTCCAGCGACAACTGGTTATACTGTCCTAGGGCTGTGGATTTACGACCGGTGGATTTAAAGCATTTTCAATGCCATTGGAACAAAGGGGAGCCTGTCATTGTCAGCAATGTGCTTGAATGTACATCAGGTTTAAGCTGGGAGCCACTAGTGATGTGGCGTGCATTCCGTCAAATTACTAATACCAAGCATGGTCAACATTTGGATGTGAAGGTCTTGGATTGCTTAGATTGGTGCGAGAAAGAGATCAATATCCATCAATTCTTTGTTGGGTATACAAATGGTCGTTATGATTGGCTTAATTGGCCTCAGATACTGAAATTGAAAGATTGGCCTCCGTCTAATTTTATTGAGGAACGTTTACCTCGTCATTGTGCCGAGTTCATATCTTCCCTGCCCTTTAAAGGATATACAGATCCTCTCAGAGGTGCTCTTAACCTTGCTGCTATTAACCCCACTGCTCTATACCCAAAGGCAGACATGGGGCCAAAGACATGTATTGCTTATGGAGTTAGTCAGGAGCTTGGACGTGGTGACTCTGTGACTAAGCTTCACTGTGGCATGTCTGATGCAGTAAATGTGTTGACTCATATTGCTAATGTGGAATTGTGCCATAAAAATCTCACTGCCATTGATAAGTTGAAGCTAAAGCACCTAGAGCAAGACAAGAGGGAGCTACTTCGAGATGATCAGGATGGAGAAAGTAATGTGCCTAGTAGTTCATCCTCTACTGTAGATGGTCTTTCATATGGGTCAGAGTTGAAAGACGATGAGAAAGTCAAAATGAAGCAAGAAAACAGTATGTCTGTTGGGGAGGATGCTTCAGATGGTGCTCTCTGGGATATTTTTCGAAGACAGGATGTACCTAAATTGCAGGAATATCTAAAGAAGCATTTTAGAGAGTTTAGGCATGTCCACTGCCGTCCGGTAAAGCAGGTTATTCACCCCATCCATGACCAGACTATGTATTTGACGCTGGAGCATAAGAGGAAGCTAAAAGAGGAGTATGGGATTGAGCCCTGGACATTTATTCAGAAGTTGGGAGATGCTGTTTTAATTCCAGCGGGCTGTCCTTACCAAGTCAGAAATCTTAAGTCATGCATCATGGTTGCACTTGATTTTGTCTCTCCTGAAAATGTTGGTGAGTGTTTCTGTTTGACAGAGGAGTTTCGCACACTTCCAATAAATCACACGTCTTCGAAGGACAAATTGGAGGTGAAGAAAATGACAGTACTTGCTATGAGTACCATGGTTAAAAAAAATGGAGAAAGCAAGTTTAGTGAATGCGAGCTTCAAGCCTTATGTGCATCCATTGCGAGATGCTGA 2271 0.4179 MPKMKRNVKFTEEKCLMCHQCQRNDKGEVVRCTRCKRKRYCLFCLKSWYPEWKHADVAEACPVCRGNCNCKACMRSDAHIKKLKKDVADKRYEGNEANLSKYVLIRLIPYVRRLNEEQMIELGIEAKRQGLSLSELNIQKAEYSRRKHVSCDNCKTSIFDYHRSCRKCSFHLCLTCCHELRDGQLLGGADPVELGFIKCSLEYLHGGKEKEPEIHESPADAEPDIRGWSRSGWHAESDGSIPCPKINDECCHGFLELKSIFGQAFISELVYKAEELAKAYTLQNAIETPDNLCSCLKISRNTDVRNNIRKAASREVSSDNWLYCPRAVDLRPVDLKHFQCHWNKGEPVIVSNVLECTSGLSWEPLVMWRAFRQITNTKHGQHLDVKVLDCLDWCEKEINIHQFFVGYTNGRYDWLNWPQILKLKDWPPSNFIEERLPRHCAEFISSLPFKGYTDPLRGALNLAAINPTALYPKADMGPKTCIAYGVSQELGRGDSVTKLHCGMSDAVNVLTHIANVELCHKNLTAIDKLKLKHLEQDKRELLRDDQDGESNVPSSSSSTVDGLSYGSELKDDEKVKMKQENSMSVGEDASDGALWDIFRRQDVPKLQEYLKKHFREFRHVHCRPVKQVIHPIHDQTMYLTLEHKRKLKEEYGIEPWTFIQKLGDAVLIPAGCPYQVRNLKSCIMVALDFVSPENVGECFCLTEEFRTLPINHTSSKDKLEVKKMTVLAMSTMVKKNGESKFSECELQALCASIARC* 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1628 756 ProSiteProfiles JmjC domain profile. 425 706 IPR003347 -
Lan4g1628 756 MobiDBLite consensus disorder prediction 541 565 - -
Lan4g1628 756 Pfam JmjC domain, hydroxylase 589 689 IPR003347 -
Lan4g1628 756 MobiDBLite consensus disorder prediction 548 564 - -
Lan4g1628 756 ProSiteProfiles Zinc finger RING-type profile. 15 65 IPR001841 -
Lan4g1628 756 SUPERFAMILY Clavaminate synthase-like 332 721 - -
Lan4g1628 756 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 12 78 IPR018866 -
Lan4g1628 756 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 10 726 IPR045109 GO:0032454|GO:0033169
Lan4g1628 756 Gene3D Cupin 324 715 - -
Lan4g1628 756 PANTHER - 10 726 - -
Lan4g1628 756 SMART cupin_9 436 706 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1628 Lan-Chr4 25161926 25183842 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Lan4g1628 JmjC 9.8e-13 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1628 K15601 - gmx:100780803 1050.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0628 8 8544998 8547419 Lan4g1628 4 25161926 25183842 LSH
Lan20g0256 20 1751642 1758536 Lan4g1628 4 25161926 25183842 LSH