Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1625 ATGGAGAACGATAACAACGTGAACAACAACAAATCGAATTCAGAAGGAGAAGGTGTCAAATCGAACAACCACATCGAAGAAGAACACAATTCCAATTTGAATATTCCTGAGGAACACATGATTGAGCAAGATGATTCTATTCCTATTGATGATGAAGGTGCCGCTGTTAATGAATCTGGTTCTGGTTCTGGTTCTGGTTCTGCTCCTCGTCGAACCCCTTTCACTAATCTCAGCCAGGTTGATGCTGACCTAGCCCTTGCCCGAACCCTTCAGGAGCAGGAGAGGGCGTACATGATGCTTAGAATGAATAATGATGGAAGTGATTATGGGAGTTGGGAAAGTGGAAGCTATTTGCATGAGGATGATTTTGATGATCTACATGATGCTAATGCTGTTGACGAGGACGAAGATGAAGACGAGGATGAAGATGATGTTGATGATGATGATGATGATGAATTCGAGGATGAAGATGCGTTTGATGTCCTTGCTCATGCTGCTAGTGGCGAACATGAAGTTTCGAGAATTGAATTTGACCCAGCTGTATTTACAAGCGATGAAGCATTTGCAAGAGCATTACAAGAGGCTGAAGAGAGGGAAATGGCAGCTAGACTCTTGGCTCTGGCTGGTATAAATGATCGAGAGGCTGATGACGCAGAGGAGCATGGTGCTAATTCTCAGGATGCATGGGAGGATGTTGATCCAGATGAACTTTCATATGAGGAACTACTGGCCCTGGGTGAAGTTGTTGGAACTGAGAGCAGAGGTCTTTCGACTGATACTATTGCCGGTTTGCCTTCAGTTAACTACAAGACTGGTGGTGATCAACACGGAAGCAATGATTCGTGTGTCATTTGCCGCGTGGACTATGAGGATGGTGAGTCCTTGACAGTTCTTTCCTGCAAGCATCTGTACCATCCTGAGTGCATTAACAATTGGTTGAAAATAAACAAGGTTTGCCCAGTTTGCAGTACTGAGGTGTCTACTCCTGGAAGCAGCATGTAG 1002 0.4471 MENDNNVNNNKSNSEGEGVKSNNHIEEEHNSNLNIPEEHMIEQDDSIPIDDEGAAVNESGSGSGSGSAPRRTPFTNLSQVDADLALARTLQEQERAYMMLRMNNDGSDYGSWESGSYLHEDDFDDLHDANAVDEDEDEDEDEDDVDDDDDDEFEDEDAFDVLAHAASGEHEVSRIEFDPAVFTSDEAFARALQEAEEREMAARLLALAGINDREADDAEEHGANSQDAWEDVDPDELSYEELLALGEVVGTESRGLSTDTIAGLPSVNYKTGGDQHGSNDSCVICRVDYEDGESLTVLSCKHLYHPECINNWLKINKVCPVCSTEVSTPGSSM* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1625 333 Pfam Ring finger domain 280 322 IPR001841 -
Lan4g1625 333 SMART ring_2 282 322 IPR001841 -
Lan4g1625 333 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 10 330 IPR043312 -
Lan4g1625 333 ProSiteProfiles Zinc finger RING-type profile. 282 323 IPR001841 -
Lan4g1625 333 MobiDBLite consensus disorder prediction 131 152 - -
Lan4g1625 333 MobiDBLite consensus disorder prediction 1 77 - -
Lan4g1625 333 MobiDBLite consensus disorder prediction 1 19 - -
Lan4g1625 333 CDD RING-H2_PA-TM-RING 282 322 - -
Lan4g1625 333 SUPERFAMILY RING/U-box 275 329 - -
Lan4g1625 333 MobiDBLite consensus disorder prediction 20 43 - -
Lan4g1625 333 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 247 329 IPR013083 -
Lan4g1625 333 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 10 330 - -
Lan4g1625 333 MobiDBLite consensus disorder prediction 58 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1625 Lan-Chr4 25141256 25148865 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1625 56 226 C3H Transcription Factor Family AT3G19910 50.282 5.95e-37 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1625 K19045 - gmx:100787418 422.165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0625 8 8529342 8532920 Lan4g1625 4 25141256 25148865 LSH