Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1623 ATGTCTTCCGCCGTCGACTCCGGCGGAGCTAAGCCGTATTTCTGCCACGTGTGCAACGAGAGAATCACCGTGATCGATGAATCTGAACCTTTCTGCCCGATTTGCCTCCAGAGTTTCGTTGAGGAATATAATGATCCAAACCCTAACCCTTCTCTCCATTTCAACCATGATCCTTCTTCCGAACCTCATTTTCCGATCAATCCTTTCTCCTTTCTCCCGTTCCTGTTGTCATCTGCTTCAACCACTTCTGTTGATCTCCAGAACCCTAATTTCTTCTCAATTTCTTCCGGACCTAGGACCCGACCCGAAATCCCCGATTCTGGAATGTTCGACCCGTTTCTCTTCCTCCAGAATCATCTCCGCGGTCTTCGTGACGATGGCGCGAATGTTCAATTTGAGATCAATCACCCTTCTGAGCCTGGATTTCGCCTCCCTACCAATATCGGTGATTATTTTCTCGGCCCTGGCCTTGAGCAGTTGATTCAGCAGCTCGCGGAGAATGATCCTAACCGTTATGGGACGCCTCCGGCGTCGAAAAGTGCTATTGATAATCTTCCGACGGTTATAGTGGATGATGAATTGTTGAATTCGGAATTGAACCAGTGCGCGGTTTGTCAGGATGAGTTTGAGAAGGGCTCTCAGGTGAAGCAGATGCCTTGTAAGCATGTGTATCATGGTGATTGCTTGATTCCTTGGCTTCAATTGCATAACTCTTGCCCTGTTTGTCGACATGAATTGCCTACTGATGATTCTGATTATGAGAATCGGCCGCGTGGGGCGCAAGGGAATGCTGGTGGTAATGAATCCAGGCCTGGTGTTAGCAGCAGTGGTAGTGGCGGTGGTGGTGGTGGTGATGGTGGTGGTGGTGGAGGAGGTGGTAATAGACCTGTTCATCGAACTTTTAGAATATCTCTGCGTTATCCTTTTGGTCCGAGTGGTTCTGCTGAAGACAGTGGTGAAAGGAGAAGTAGGCAAGAAGATTTGGATTGA 990 0.4869 MSSAVDSGGAKPYFCHVCNERITVIDESEPFCPICLQSFVEEYNDPNPNPSLHFNHDPSSEPHFPINPFSFLPFLLSSASTTSVDLQNPNFFSISSGPRTRPEIPDSGMFDPFLFLQNHLRGLRDDGANVQFEINHPSEPGFRLPTNIGDYFLGPGLEQLIQQLAENDPNRYGTPPASKSAIDNLPTVIVDDELLNSELNQCAVCQDEFEKGSQVKQMPCKHVYHGDCLIPWLQLHNSCPVCRHELPTDDSDYENRPRGAQGNAGGNESRPGVSSSGSGGGGGGDGGGGGGGGNRPVHRTFRISLRYPFGPSGSAEDSGERRSRQEDLD* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1623 329 CDD RING-H2_RNF126_like 201 243 - -
Lan4g1623 329 SUPERFAMILY RING/U-box 181 250 - -
Lan4g1623 329 Pfam Ring finger domain 200 243 IPR001841 -
Lan4g1623 329 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 164 249 IPR013083 -
Lan4g1623 329 MobiDBLite consensus disorder prediction 246 329 - -
Lan4g1623 329 ProSiteProfiles Zinc finger RING-type profile. 202 243 IPR001841 -
Lan4g1623 329 Pfam zinc-ribbon 12 43 IPR039525 GO:0061630
Lan4g1623 329 PANTHER OS06G0101300 PROTEIN 8 313 - -
Lan4g1623 329 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 8 313 - -
Lan4g1623 329 SMART ring_2 202 242 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1623 Lan-Chr4 25132106 25135038 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1623 146 260 C3H Transcription Factor Family AT5G01980 47.826 2.02e-33 127