Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1621 ATGTGGCTATCCTCTGTCTCCACCAGCTCCTGCTACTCAATCATTAGACCTCTGTTCCCTCTTTTCCTATTCAACAACTTCTCTCCTTTCAACTCTTCATCATTTTCATCATCATCATCCATGTCTAACTCTGACGGCACCCCTAACGGCGTTACTACCACCACCACCTCCCTCTCCGTCAAAAAACCCCCTTCCAAAGACCGTCACAGCAAAGTTGACGGCAGAGGCCGCCGCATACGCATGCCAATCATATGCGCCGCACGTGTCTTCCAACTCACACGTGAGCTAGGTCATAAGTCTGATGGTCAAACCATCGAGTGGCTCCTCCGTCAAGCGGAGCCGTCAATCATCGCAGCCACCGGAACCGGTACTACTCCGGCAACGTTCTCATCTCTCTCTGTTTCACTCCGTGGCGTGTCTAATTCTTTCTCTTCACCTTCTTCTACTTCTTCTCATCATCATAAAACGCTTCTTACTACTACTCCTTTTATTCTCGGGAAGCGTATTCATACCAATGATGATGATGGTTCTGTAACTGCCAAAGACGACGCCGTTTCGGCTGGGTCCTTTGTAGGGTCTGCTTCTCCGGCTGGATTGTGGGCCCTACCTGCGAGGCCTGATTTTGGACAGATTTGGAGCTTCGCGGCGGCGGCGGCTCCTCCGCCTGAGATGGTGTCGGTTTCTCAGCAGCAGCAACAGGCTTCTTTCTTCCTTCATCAGCAGCAGCAACAACAAGTGGCTATGGGAGAAGCTTCCGCGGCGAGGTTGGGGAATTATCTTCCTGGTCATCTGAATTTGCTAGCTTCGTTGTCCGGAGGACATGGAAATTCTGGTCGGAGAGAAGATGAACAACATTGA 858 0.5105 MWLSSVSTSSCYSIIRPLFPLFLFNNFSPFNSSSFSSSSSMSNSDGTPNGVTTTTTSLSVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPATFSSLSVSLRGVSNSFSSPSSTSSHHHKTLLTTTPFILGKRIHTNDDDGSVTAKDDAVSAGSFVGSASPAGLWALPARPDFGQIWSFAAAAAPPPEMVSVSQQQQQASFFLHQQQQQQVAMGEASAARLGNYLPGHLNLLASLSGGHGNSGRREDEQH* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1621 285 ProSiteProfiles TCP domain profile. 65 119 IPR017887 -
Lan4g1621 285 PANTHER TRANSCRIPTION FACTOR TCP FAMILY-RELATED 41 282 - -
Lan4g1621 285 MobiDBLite consensus disorder prediction 38 61 - -
Lan4g1621 285 Pfam TCP family transcription factor 65 156 IPR017887 -
Lan4g1621 285 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 41 282 IPR005333 GO:0003700
Lan4g1621 285 MobiDBLite consensus disorder prediction 38 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1621 Lan-Chr4 25123980 25125690 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1621 57 283 TCP Transcription Factor Family AT5G23280 66.239 5.17e-94 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Lan4g1621 TCP 1.5e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1621 K16221 - gmx:100799005 301.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan20g0262 20 1779200 1780890 Lan4g1621 4 25123980 25125690 LSH