Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1616 ATGTCGGAACCAGCGTCTCAGCCACCGTACTGGTGCTACCACTGCGACAAACGCGTCTCCACCGAAACCCTCCCCAACCTCACCGACGTCATATGCGGCGATTGCAAAAACGGCTTCGTCGAACTCATCCCTCCTCCCACCGCTCTCGATAATCCCTCTCTCTCCCCTTCTGATTCCGATGATCCTTATTTCGCTTCTCACTTCCTCCACCTCCTTCACCTCATCGCTCATTCCGCGCGTGACGACGACGCTTCTCCCCCTCCTCCTCCGTCTCGCTCTCCTGATAACGATTTCCTCAGGATCGAGCTCGGTGGCTTGGATAACGACGATGATGATGAAGACGAAGAGGAAGACGGAGAAGAAGAACACGAAGATCAAATCGATAACGTGGATCTTCCTGGAGATGACGAAGATTTGAGCCGTAGGAGGCGTGAGGTTCTTCGTCTTCGAATTAGGGATTTGGCGTCGCGAACGAGGAGCATGAGGAACCGGATCTTGGATTGGCCTGGTATTCTGACCGGTATGGAAGACAATTCAATTGATTTCCGTCTTCAGGCATCGGAATCCGACCGTTACGTCGGGAACCCTGAGGATTATGTTGACGCGGCTGAGTTCGATGCGTTGCTTCAGACTCTGGCGGATACGGACGGTGGTGGGAAGAGAGGAGCACCGCCAGCGGCAAAGTCAGCGGTTGACGCGTTGCCGACGGTGGAGATAACGGCAGAGAAGGAGGCTGTGGCGTGTGCCATATGTAAGGATATGGTTGGTGTTGGTGGCGTGGCGAAGAGATTGCCGTGTGGGCATCAGTACCATGGAGATTGCATTGTTCCTTGGTTAGGTTCTCGTAATTCATGCCCTGTTTGTAGGTTTGAGCTTCCAACTGATGATAAGGAATATGAACAACAGAGGAAGAATAAGAGGGTGATGAATATTTCTTCTGACGGAGCTTCCGGTTCGGGTTGA 963 0.5286 MSEPASQPPYWCYHCDKRVSTETLPNLTDVICGDCKNGFVELIPPPTALDNPSLSPSDSDDPYFASHFLHLLHLIAHSARDDDASPPPPPSRSPDNDFLRIELGGLDNDDDDEDEEEDGEEEHEDQIDNVDLPGDDEDLSRRRREVLRLRIRDLASRTRSMRNRILDWPGILTGMEDNSIDFRLQASESDRYVGNPEDYVDAAEFDALLQTLADTDGGGKRGAPPAAKSAVDALPTVEITAEKEAVACAICKDMVGVGGVAKRLPCGHQYHGDCIVPWLGSRNSCPVCRFELPTDDKEYEQQRKNKRVMNISSDGASGSG* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1616 320 MobiDBLite consensus disorder prediction 106 133 - -
Lan4g1616 320 Pfam zinc-ribbon 10 43 IPR039525 GO:0061630
Lan4g1616 320 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 25 320 - -
Lan4g1616 320 SMART ring_2 248 288 IPR001841 -
Lan4g1616 320 MobiDBLite consensus disorder prediction 299 320 - -
Lan4g1616 320 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 25 320 - -
Lan4g1616 320 SUPERFAMILY RING/U-box 244 295 - -
Lan4g1616 320 Pfam Ring finger domain 248 289 IPR001841 -
Lan4g1616 320 ProSiteProfiles Zinc finger RING-type profile. 248 289 IPR001841 -
Lan4g1616 320 MobiDBLite consensus disorder prediction 79 138 - -
Lan4g1616 320 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 215 295 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1616 Lan-Chr4 25100698 25101976 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1616 159 305 C3H Transcription Factor Family AT5G01980 46.104 7.27e-36 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1616 - - lang:109346529 583.948
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0624 8 8527199 8528582 Lan4g1616 4 25100698 25101976 LSH