Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1608 ATGGATAATTATATTTGTCTTAGTTCATCGGATGATGATCTAGAGGAGATAGAAGATCCAAGGAGGTCTCTCCCACAATGGCCTGCTCCTGAAATGAATTCAGGTAATGATGGGTGGTCTAAGCAGGGTAGTTCTTCAAGAGGAGCAAATACTTCAACCACAACCTCTTCTAATGTCAATAATCATTCACAAACCATACCTCATACACAACCCTCTTCTAGCGACAATTCACTGAATCACAGAGTTGCAAAAAGGGATGAACCTTCCTATCGTTCTCAGAATGGAAAATCAATTTTTAATACTTCTGGTTCCGATTATGAGAAAATGCCATCTCAACAAGCTTTCAAAAGGACCCTTCCATTATCTCTTCAGCCATCTCTTCCATCTTCATCATTTGCACCAGATATCAGATCAAGCAACTCAAAACATCACATGAGCAGCAGTCAATTTCATGATACATATAAGAATCGTCGCCATGGAATAGGGCCTAGCGTGACAGGTGACAAGAGCTTCATTCGTGAAAATTATAACAGAGGAAATGATGAAGATCGTCTTATGTTTCCAAATGGTGGGAGTAGGATTCTTCCTTCATCTTTGGCACATGGAAAGGCTATAAATCCACAGTTCGCTAGTTCCAGTGAAGCTGCATATCGTTCAGGGGCACTTGATGAAAGGGCTTCTGCAACTGATGAGAGACTTATTTATGAGGCAGCATTACAGGATCTCTATCGATCAAAGACGGAAACAGATTTACCTGATGGTCTAATGTCTGTCTCTCTTCTGAGACATCAGAAAATTGCATTAGCTTGGATGCTTCAGAAGGAAACAAGAAGTTTGCATTGCTTGGGGGGTATTTTGGCTGATGATCAGGGCCTTGGAAAGACAATTTCGATGATTGCCCTTATCCTAATGCATAAGTCATTGCAGTCAAAATCAAAAACAGATGATGCATGCAATCATAAAACTGAAGCTTTGAATTTGGACGACGATGATGATAATGGTATTGTTGATGTGGATAAGCTTAAAAAGAATGAAGAGTCTGATGATATAAAACCTACCACAGAACCAAGCAGTTCGACACGGGCACCAAGTAGGAAAAGGCCTGCTGCTGGTACGCTGGTTGTGTGCCCTGCAAGTGTTGTTCGACAGTGGGCCAGGGAGCTTGATGATAAAGTTGGAAATGAGAAGCTTTCTGTTTTAATTTATCACGGGGGCAGTAGGACAAAAAATCCTGATGACCTTGCAACATATGATGTGGTTATCACAACATATGCTATTGTGACTAATGAAGTTCCAAAGCAACCGTTAGTGGACGATGATGAAAATGATGAAAAAATTGATGAAAGATTTGGGTTATCTTCTGTGTTTTCTGCAAGTAAAAAGAGGAAAAAGGCATACAATGGAAATAAGAAGAGTAAAAAGGGTAAAAAGGGAATTGATAGCTCTCTCGAATGTGGTTCTGGTCCTCTTGCAAAAGTAGGTTGGTTTAGGATTATTCTAGATGAAGCTCAAACTATCAAGAACCATAGAACTCAGGTAGCTAGAGCTTGCTGCAGCCTTAGGGCCAAAAGAAGGTGGTGCTTATCTGGAACACCTATCCAAAATACTATTGATGATCTGTATAGCTATTTTAGGTTCCTAAGGTATGATCCTTATGCTGTATATAAATCATTCTACAATACAATTAAAGTTCCAATATCCAGAAATTCTATACACGGTTACAAGAAGCTTCAAGCAGTCTTGAGGGCCATAATGCTGCGTCGTACAAAAGGAACTTTAATCGATGGGCAGCCAATTATCAATTTGCCCCCTAAAACAATTGAGCTGAATAAGGTGGATTTCTCTGGGGAGGAGCGGGCCTTCTACACCAAGTTGGAAGCAGATTCACGTTCTCAATTTAAGGCATATGCTGCTGCTGGCACAGTGAATCAGAACTATGCAAATATTCTTTTAATGCTTCTACGACTCCGTCAGGCTTGTGATCACCCACTTCTTGTCAAAGATTATAATTCCAATCCTGTCGGACAGGATTCTATTGAAATGGCAAAAAGGCTTCCAAGGGATATGCTGATTAATCTATATAAGGAATTGGATACTACCTCTGCTATCTGCCATGTTTGCAATGATCCACCTGAAGACCCTGTTATTACTATGTGCAGTCATGTCTTCTGTTATCAATGTGTATCAGACTTTTTGACAGCTGATGATAATACATGCCCCGCAGTTTATTGTAAAGAGACAGTTGGTGAAGATGTTGTTTTCTCCAAAACTACTTTGAGAAGCTGCATCTCTGATGATCTTGATGGCAGTAGTTCCTCAAATTCACATCATGTTGATTATTCACTATTTCAGGATACTGAGTACAACTCATCTAAAATCAAAGCTGTCCTTGAGATTCTGCAGTCAAATCGCAAAATGAAGGCTCCTAGTACTGTCTCACCGAATTCCTCTGGAGGCCGTGGGGATTTACCGTCTCATGATATTTCAATTATTGAAGATTGTGACTCAGATGTCCGGGTTACAAAACACACAAGAAAATATTCAGAGCCCATCACTGAAGGAGCAATAAAGGCTATAATTTTTTCCCAATGGACTAGTATGTTGGACTTAGTCGAGGATGCATTGAAGCAATCTCGAACTCGTATACGATACAGGAGACTTGATGGTAGGATGACTCTACTTGCAAGGGACAAAGCTGTTAAGGATTTCAATACTGATCCTGAGGTAACTGTTATGCTGATGTCACTAAAAGCAGGCAACCTTGGGTTGAATATGGTTGCTGCATGCCATGTTATTCTTTTGGATCTTTGGTGGAATCCAACAACTGAGGATCAAGCTGTTGATCGAGCTCATAGAATTGGACAGACTCGTCCTGTCACTGTGACACGGCTCACTATAAAAGATACAGTTGAAGATAGAATACTGGCTCTTCAGGAAGAAAAGAGAAAGATGGTTGCATCTGCTTTTGGAGAAGACCATGCTGGTGGTACAGCTACCCGCCTTACAGTGGATGATCTCAAATATCTTTTTATGGTCTAG 3039 0.4051 MDNYICLSSSDDDLEEIEDPRRSLPQWPAPEMNSGNDGWSKQGSSSRGANTSTTTSSNVNNHSQTIPHTQPSSSDNSLNHRVAKRDEPSYRSQNGKSIFNTSGSDYEKMPSQQAFKRTLPLSLQPSLPSSSFAPDIRSSNSKHHMSSSQFHDTYKNRRHGIGPSVTGDKSFIRENYNRGNDEDRLMFPNGGSRILPSSLAHGKAINPQFASSSEAAYRSGALDERASATDERLIYEAALQDLYRSKTETDLPDGLMSVSLLRHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISMIALILMHKSLQSKSKTDDACNHKTEALNLDDDDDNGIVDVDKLKKNEESDDIKPTTEPSSSTRAPSRKRPAAGTLVVCPASVVRQWARELDDKVGNEKLSVLIYHGGSRTKNPDDLATYDVVITTYAIVTNEVPKQPLVDDDENDEKIDERFGLSSVFSASKKRKKAYNGNKKSKKGKKGIDSSLECGSGPLAKVGWFRIILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNTIDDLYSYFRFLRYDPYAVYKSFYNTIKVPISRNSIHGYKKLQAVLRAIMLRRTKGTLIDGQPIINLPPKTIELNKVDFSGEERAFYTKLEADSRSQFKAYAAAGTVNQNYANILLMLLRLRQACDHPLLVKDYNSNPVGQDSIEMAKRLPRDMLINLYKELDTTSAICHVCNDPPEDPVITMCSHVFCYQCVSDFLTADDNTCPAVYCKETVGEDVVFSKTTLRSCISDDLDGSSSSNSHHVDYSLFQDTEYNSSKIKAVLEILQSNRKMKAPSTVSPNSSGGRGDLPSHDISIIEDCDSDVRVTKHTRKYSEPITEGAIKAIIFSQWTSMLDLVEDALKQSRTRIRYRRLDGRMTLLARDKAVKDFNTDPEVTVMLMSLKAGNLGLNMVAACHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIKDTVEDRILALQEEKRKMVASAFGEDHAGGTATRLTVDDLKYLFMV* 1013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1608 1012 MobiDBLite consensus disorder prediction 340 370 - -
Lan4g1608 1012 SMART helicmild6 869 954 IPR001650 -
Lan4g1608 1012 ProSiteProfiles Zinc finger RING-type profile. 704 740 IPR001841 -
Lan4g1608 1012 MobiDBLite consensus disorder prediction 1 112 - -
Lan4g1608 1012 Gene3D - 234 320 IPR038718 -
Lan4g1608 1012 Gene3D - 456 600 IPR038718 -
Lan4g1608 1012 MobiDBLite consensus disorder prediction 29 78 - -
Lan4g1608 1012 Pfam Helicase conserved C-terminal domain 857 954 IPR001650 -
Lan4g1608 1012 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR CHR28 44 1011 - -
Lan4g1608 1012 CDD DEXDc_SHPRH-like 260 588 - -
Lan4g1608 1012 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 275 550 IPR014001 -
Lan4g1608 1012 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 681 756 IPR013083 -
Lan4g1608 1012 MobiDBLite consensus disorder prediction 126 147 - -
Lan4g1608 1012 MobiDBLite consensus disorder prediction 92 112 - -
Lan4g1608 1012 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 596 1011 IPR027417 -
Lan4g1608 1012 CDD SF2_C_SNF 857 964 - -
Lan4g1608 1012 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 247 588 IPR027417 -
Lan4g1608 1012 ProSitePatterns Zinc finger RING-type signature. 719 728 IPR017907 -
Lan4g1608 1012 SMART ring_2 704 742 IPR001841 -
Lan4g1608 1012 Pfam SNF2-related domain 263 665 IPR000330 GO:0005524|GO:0140658
Lan4g1608 1012 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 850 1007 IPR001650 -
Lan4g1608 1012 Gene3D - 603 1011 IPR027417 -
Lan4g1608 1012 Pfam Zinc finger, C3HC4 type (RING finger) 704 740 - -
Lan4g1608 1012 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 44 1011 - -
Lan4g1608 1012 SMART ultradead3 256 567 IPR014001 -
Lan4g1608 1012 MobiDBLite consensus disorder prediction 126 189 - -
Lan4g1608 1012 Gene3D - 354 443 IPR038718 -
Lan4g1608 1012 SUPERFAMILY RING/U-box 699 741 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1608 Lan-Chr4 25051935 25061586 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1608 1 912 RAD5 or RAD16-like Gene Family AT1G50410 55.734 0.0 903
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lan4g1608 SNF2_N 6.8e-70 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g1608 4 25051935 25061586 Lan4g1608 4 25051935 25061586 ECH
Lan8g0622 8 8508018 8519232 Lan4g1608 4 25051935 25061586 LSH
Lan20g0272 20 1838320 1848230 Lan4g1608 4 25051935 25061586 LSH