Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1591 ATGGTTCTATCCAACAAGAAGCTCAAAAACAAGCTCAGAACTGAATCAACAATACTTCAAAACTCTCTTCAAACTCTTTCTGATTCTGCCACCAAAAAAACCACACTCTCCAAGAGAGAGAAACACCGAAAGCTGCGTTCTTTGAACCCTGTAGAGACTAGTGGTAATGATGAATCAAGCAAGAAGGAAAATGGGTCTGAAGATTTGACCATTAAGAAGAAGAAAATCAACAAAAAGAGGAAGAGGAAAGTGACTGAAGAAAATGGTGATGTGGCAGATGGGGATATTATTGATTCCAGAAACTCAAGTAACAGTACCAAGAAGAAGAAGAAGAATAAAAAAGTTAAAAGTAATGAAGAGAAAGCGGTGGAGGCCACTGAGTTAACTAGTAAAGAGAATGGTGATGTGGCAAATGAGGTAAGCAACAATGCCGACAAGTCAAAGAACAAGACTAAGAAGAAAAAGAAGAAGAAGAACAACAAGAAGAAGACCAAACAGAATGGAGAGGAGGTTGCCGAGAAAACTGAGCCGGCCACCGAGTTAACTACTGCCATTACTACCACCGTTACTACAGCTGCTACAAGTCAAGAGAGTGTTGAAGTTCCGACAAAAGTTTATGTGGGAGGAATTCCCTATTATTCAACTGAGGATGATATTCGAAGTTATTTTGAAAGCTGTGGCACCATTACTGAAGTTGATTGCATGTATTTTCCTGAAACTGGCAAGTTTAGAGGAATTGCAATTATTAGCTTTAAGACTGAAGCCGCAGTCAAACGAGCATTGGCTTTTGACGGAGCTGACATGGGAGGACTCTTTCTGAAAGTCCAACCATATAAATCTACTCGAGCCAGTAAAGTACCAGATTTTGCTCCACAAATTTTGGAGGGATACAATAGAATATATGTTGGAAATTTGTCCTGGGATATAACAGAGGAGGAACTGAAGAAATTCTTCTCAAATTGCAATATAACATCAGTACGATTTGGTATGGACAAGGAAACAGGAGAATTTCGAGGGTATGCCCATGTGGATTTCAGTGATAGCGAGTCACTGAAAACATCACTTACTTTGGACCAAAACATTTTGTTTGGGAGACCCGTTAAGATAAGTTGTGCAGTTCCTTTGAAGAAAAAATCAGGAACCAATACAAGCTCTGTCACTACCAGTAATCTTAAATCAGGAACAAATACAAGCTCTGTTGCTACAAGTAATCCTAAATCAGTTACAAATACGAGCTCTGTTGCTACAAGCAATCCTAAATCAGTAACAAATACAAGCTCTGTTGCTACTAGTTATCCCGAATCAGGAATCAATATAAGCTCTGTTGCTACAAGTAATCCTACAAGTCTTGGGTTGGATGCTGAGAAATCAACTACCGTTGCAAGTGGCAAGTTGAGGAGGCGGAAATGCTACGAGTGTGGTGAAAAAGGACATCTTCTCTCAGAATGCCCAAAGAATAAAATGGTCACTCCAACTGCAACCTAA 1485 0.396 MVLSNKKLKNKLRTESTILQNSLQTLSDSATKKTTLSKREKHRKLRSLNPVETSGNDESSKKENGSEDLTIKKKKINKKRKRKVTEENGDVADGDIIDSRNSSNSTKKKKKNKKVKSNEEKAVEATELTSKENGDVANEVSNNADKSKNKTKKKKKKKNNKKKTKQNGEEVAEKTEPATELTTAITTTVTTAATSQESVEVPTKVYVGGIPYYSTEDDIRSYFESCGTITEVDCMYFPETGKFRGIAIISFKTEAAVKRALAFDGADMGGLFLKVQPYKSTRASKVPDFAPQILEGYNRIYVGNLSWDITEEELKKFFSNCNITSVRFGMDKETGEFRGYAHVDFSDSESLKTSLTLDQNILFGRPVKISCAVPLKKKSGTNTSSVTTSNLKSGTNTSSVATSNPKSVTNTSSVATSNPKSVTNTSSVATSYPESGINISSVATSNPTSLGLDAEKSTTVASGKLRRRKCYECGEKGHLLSECPKNKMVTPTAT* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1591 494 ProSiteProfiles Zinc finger CCHC-type profile. 468 485 IPR001878 GO:0003676|GO:0008270
Lan4g1591 494 SMART c2hcfinal6 469 485 IPR001878 GO:0003676|GO:0008270
Lan4g1591 494 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 203 280 IPR000504 GO:0003723
Lan4g1591 494 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 78 489 - -
Lan4g1591 494 SUPERFAMILY RNA-binding domain, RBD 195 281 IPR035979 GO:0003676
Lan4g1591 494 CDD RRM2_PHIP1 299 370 IPR034362 -
Lan4g1591 494 MobiDBLite consensus disorder prediction 148 162 - -
Lan4g1591 494 Pfam Zinc knuckle 468 485 IPR001878 GO:0003676|GO:0008270
Lan4g1591 494 Coils Coil 147 167 - -
Lan4g1591 494 MobiDBLite consensus disorder prediction 378 429 - -
Lan4g1591 494 PANTHER PHRAGMOPLASTIN INTERACTING PROTEIN 1-RELATED 78 489 - -
Lan4g1591 494 SMART rrm1_1 204 276 IPR000504 GO:0003723
Lan4g1591 494 SMART rrm1_1 299 370 IPR000504 GO:0003723
Lan4g1591 494 Gene3D - 453 493 - -
Lan4g1591 494 Gene3D - 137 286 IPR012677 -
Lan4g1591 494 CDD RRM1_PHIP1 205 276 IPR034361 -
Lan4g1591 494 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 298 374 IPR000504 GO:0003723
Lan4g1591 494 MobiDBLite consensus disorder prediction 56 73 - -
Lan4g1591 494 SUPERFAMILY RNA-binding domain, RBD 292 381 IPR035979 GO:0003676
Lan4g1591 494 SUPERFAMILY Retrovirus zinc finger-like domains 463 487 IPR036875 GO:0003676|GO:0008270
Lan4g1591 494 MobiDBLite consensus disorder prediction 25 179 - -
Lan4g1591 494 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 300 367 IPR000504 GO:0003723
Lan4g1591 494 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 205 271 IPR000504 GO:0003723
Lan4g1591 494 Gene3D - 294 384 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1591 Lan-Chr4 24945713 24948771 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1591 203 435 Eukaryotic Initiation Factors Gene Family AT2G36660 26.562 4.13e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1591 - - lang:109346503 821.617
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g1591 4 24945713 24948771 Lan4g1591 4 24945713 24948771 ECH