Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1589 ATGAAGAGAGAAAGAGATATTAATATCACAACCATGGCCAACTATTTGATGTTATTTTCACGTGGAGGTGAATTTGAGACAACCTATTTCAACACTTCCAACAACAACAACAATCGTGTGTTTGAGTGCAAAACATGTAATAGACAATTCCCATCATTTCAAGCACTTGGTGGCCACCGTGCTAGTCATAAAAAACTAAGGTTAATGGGACAAGAAAAAGACCAAATGGTTCATGATTCACCTACTCCAAAGGCTAAAACACATGAATGTTCCATTTGTGGTTTAGAATTTGCAATAGGGCAAGCTTTGGGAGGCCATATGAGACGTCATAGAGTACCATCTAGTTCAAATGGAGACATGCAAAGTTCTATTACAAGTTTGAGTTGTAGTGTTGATACAAAAAAGAAGAAGGGGAATAGTAAGAAAGTTTTGTTTTTGGATTTGAATTTAACACCATTAGAGAATGATATTGAGATTTTGAAGATTAGAGAAACAATTCCCTTGGTGGGTTGTTTCAATTGA 522 0.3582 MKRERDINITTMANYLMLFSRGGEFETTYFNTSNNNNNRVFECKTCNRQFPSFQALGGHRASHKKLRLMGQEKDQMVHDSPTPKAKTHECSICGLEFAIGQALGGHMRRHRVPSSSNGDMQSSITSLSCSVDTKKKKGNSKKVLFLDLNLTPLENDIEILKIRETIPLVGCFN* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1589 173 ProSitePatterns Zinc finger C2H2 type domain signature. 43 63 IPR013087 -
Lan4g1589 173 PANTHER ZINC FINGER PROTEIN ZAT5 11 159 - -
Lan4g1589 173 ProSiteProfiles Zinc finger C2H2 type domain profile. 88 110 IPR013087 -
Lan4g1589 173 ProSiteProfiles Zinc finger C2H2 type domain profile. 41 68 IPR013087 -
Lan4g1589 173 PANTHER ZINC FINGER PROTEIN ZAT12 11 159 - -
Lan4g1589 173 SMART c2h2final6 41 63 IPR013087 -
Lan4g1589 173 SMART c2h2final6 88 110 IPR013087 -
Lan4g1589 173 Pfam C2H2-type zinc finger 88 111 - -
Lan4g1589 173 Pfam C2H2-type zinc finger 40 65 - -
Lan4g1589 173 SUPERFAMILY beta-beta-alpha zinc fingers 39 110 IPR036236 -
Lan4g1589 173 Gene3D Classic Zinc Finger 26 112 - -
Lan4g1589 173 ProSitePatterns Zinc finger C2H2 type domain signature. 90 110 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1589 Lan-Chr4 24935307 24935946 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1589 1 169 C2H2 Transcription Factor Family AT2G37430 43.750 2.04e-37 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan4g1589 zf-C2H2_6 2.3e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1589 - - gmx:100500371 204.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g1589 4 24935307 24935946 Lan4g1589 4 24935307 24935946 ECH
Lan11g1388 11 21475215 21475894 Lan4g1589 4 24935307 24935946 LSH
Lan20g0297 20 2021621 2022421 Lan4g1589 4 24935307 24935946 LSH