Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1582 ATGGCGAAGACAAATTCATCACAAGGAAGAAAGAGAGTTGATGCCGTTGATTCTCGTGCTGCTTCCGTTCTTGTTCGCACCAAAGATGGCAGTGCTTTCACTCGATGTGAAGAGTGCAATAAGGACGTTCCTGTTGCACTTATAAGCATGCACAGTTGCAGCTTGGAAGCTAAGATTAAAATGAATCTAGAGTCTCAGGTTGTGGAGGTTACTGAAGTCAAGAAGCAAGAGAGGAAGAAGCCAAAATCTAAAGAACCAAATGCTAAAAGAGCTAAAACTGAGAAAGTGAAGAAGGTGAAGGATCCTAACCTCCCCAAGCGTCCTGCCACAGCTTTCTTTCTATTTCTGGACGACTTCAGAAAAGCTTTTAAAGAAGCAAATCCTGATTCTAAGGACGTTAAAAGGGTTGGTAAAGAGGGTGGTGAGAAGTGGAGATCTATGTCTGATGAGGAAAAGAAGCCTTATTTAGATAAATTTGCTGAACTCAAGGCTGAGTATGAGAAGGCTATGGAAACCTATAAGTCTCGTGATGAGGAAGAGGAACAAGAGGGATTTGACAAATCTGATAAGGAGGCTGCTCCAGAAGAAGTGGAAGAGTTACCTGGTGACGAGTAG 615 0.4276 MAKTNSSQGRKRVDAVDSRAASVLVRTKDGSAFTRCEECNKDVPVALISMHSCSLEAKIKMNLESQVVEVTEVKKQERKKPKSKEPNAKRAKTEKVKKVKDPNLPKRPATAFFLFLDDFRKAFKEANPDSKDVKRVGKEGGEKWRSMSDEEKKPYLDKFAELKAEYEKAMETYKSRDEEEEQEGFDKSDKEAAPEEVEELPGDE* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1582 204 MobiDBLite consensus disorder prediction 127 150 - -
Lan4g1582 204 Gene3D High mobility group box domain 88 190 IPR036910 -
Lan4g1582 204 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 105 174 IPR009071 -
Lan4g1582 204 Coils Coil 60 80 - -
Lan4g1582 204 MobiDBLite consensus disorder prediction 170 195 - -
Lan4g1582 204 Pfam HMG (high mobility group) box 105 174 IPR009071 -
Lan4g1582 204 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 3 193 - -
Lan4g1582 204 MobiDBLite consensus disorder prediction 71 103 - -
Lan4g1582 204 Coils Coil 156 183 - -
Lan4g1582 204 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 3 193 - -
Lan4g1582 204 CDD HMGB-UBF_HMG-box 105 171 - -
Lan4g1582 204 SUPERFAMILY HMG-box 96 179 IPR036910 -
Lan4g1582 204 MobiDBLite consensus disorder prediction 170 204 - -
Lan4g1582 204 SMART hmgende2 104 175 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1582 Lan-Chr4 24878433 24880333 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Lan4g1582 HMG_box 4.6e-21 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1582 K25507 - gmx:100810345 290.426