Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1569 ATGATTTCAAACTCTGGGATTAATGGTAACTATGAAACTTCAGATTCTAATGCAATGAATTTCGCAATCGATGCAGCGAAACGCGTAAGGTACGAAGAGAATGCAAGGTTTCAAAAGTTTAAGGGTGTTGTGCCTCAGCAAAATGGGCATTGGGGTGCACAAATATATGCAAATCACCAAAGAATCTGGCTAGGGACATTCAAGTCAGAAAAAGAAGCTGCAATGGCTTATGATAGCGCGTCGGTCAAGCTTAGAAGCGGCGAAAGCCATAGGAACTTTCCATGGAATGATCAAACAGTTCAAGAGCCTCAGTTTCAAAGCCTTTATAGCACAGAAGCAGTGCTAAGCATGATAAAAGATGGAATCTATCCATCAAAATTTGCAACTTTTCTTAGGACTCAAACACAAGGTGATATTGTTAGTAACAAGTGCGAAAATATAAGGATGAAGATTCATGAAGAAAACTTATCTTGCACTTTACTTTTTCAAAAAGAATTGACACCAAGTGATGTTGGAAAACTCAATAGGCTTGTCATTCCAAAAAAGCATGCAGTTACATATTTCCCTTATGTTTGTGGCATTGCAGAGGCTAAGAATAATGACATTGATGTTGATATTGAAGTTATATTTTATGACAATCTTATGAGGTCATGGAAATTTAGATATTGTTATTGGAAGAGTAGCCAAAGTTTTGTGTTCACAAGAGGGTGGAATAGGTTTGTGAAGGATAAGAAATTAAAGGCTAAAGACACCATTGCATTTTATGTTTGTGAGCCTGTAAATTTGAGAAAAGGGGGAGAAGCATTTTCATTGATAGATATAATCTATTATAATGATGATCATGAGAGAAAGCAATGTTTTGAAGTGAAGGGTGATGCAGAACAAGGTTTAAGAAACATGTTAACATTAAGTGATGAAGAAGAAGATGAAAAAGATGAAGATATAGGCCAAGAGACCAAGGATATGAAGGATTTGGATGCATTGAATTCACCAAATAATAGTGCACAAAAAGGTTTGAGGCTCTTTGGTGTGTGTATAAACTGA 1044 0.3611 MISNSGINGNYETSDSNAMNFAIDAAKRVRYEENARFQKFKGVVPQQNGHWGAQIYANHQRIWLGTFKSEKEAAMAYDSASVKLRSGESHRNFPWNDQTVQEPQFQSLYSTEAVLSMIKDGIYPSKFATFLRTQTQGDIVSNKCENIRMKIHEENLSCTLLFQKELTPSDVGKLNRLVIPKKHAVTYFPYVCGIAEAKNNDIDVDIEVIFYDNLMRSWKFRYCYWKSSQSFVFTRGWNRFVKDKKLKAKDTIAFYVCEPVNLRKGGEAFSLIDIIYYNDDHERKQCFEVKGDAEQGLRNMLTLSDEEEDEKDEDIGQETKDMKDLDALNSPNNSAQKGLRLFGVCIN* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1569 347 MobiDBLite consensus disorder prediction 305 331 - -
Lan4g1569 347 CDD AP2 38 96 IPR001471 GO:0003700|GO:0006355
Lan4g1569 347 Pfam AP2 domain 39 85 IPR001471 GO:0003700|GO:0006355
Lan4g1569 347 Pfam B3 DNA binding domain 162 256 IPR003340 GO:0003677
Lan4g1569 347 SUPERFAMILY DNA-binding pseudobarrel domain 159 259 IPR015300 -
Lan4g1569 347 Gene3D AP2/ERF domain 38 95 IPR036955 GO:0003700|GO:0006355
Lan4g1569 347 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 1 347 IPR044800 GO:0003700
Lan4g1569 347 CDD B3_DNA 161 255 IPR003340 GO:0003677
Lan4g1569 347 PANTHER AP2/ERF AND B3 DOMAIN TRANSCRIPTION FACTOR 1 347 - -
Lan4g1569 347 ProSiteProfiles AP2/ERF domain profile. 39 94 IPR001471 GO:0003700|GO:0006355
Lan4g1569 347 SMART rav1_2 39 100 IPR001471 GO:0003700|GO:0006355
Lan4g1569 347 SMART B3_2 162 265 IPR003340 GO:0003677
Lan4g1569 347 ProSiteProfiles B3 DNA-binding domain profile. 162 278 IPR003340 GO:0003677
Lan4g1569 347 Gene3D - 158 270 IPR015300 -
Lan4g1569 347 SUPERFAMILY DNA-binding domain 39 96 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1569 Lan-Chr4 24731609 24732652 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1569 39 278 RAV Transcription Factor Family AT1G51120 57.358 6.84e-99 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lan4g1569 B3 5.6e-24 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1569 K09287 - gmx:102660503 396.741
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0571 8 7891866 7892910 Lan4g1569 4 24731609 24732652 LSH