Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1568 ATGGATCGAAAGAGGGGAAGACCAGGTGCTCCTGCTTTCAACACCAATGGCGCCTCCAAGAAATTCAAACCTGAAATGGAGTCATTTACATCTGGTATAGGAAGCAAATCGAAGCCTTGCACAAAGTTTTTCAGCACCTCTGGCTGTCCATTTGGTGAGGGGTGTCATTTTCTGCATTATGTTCCTGGTGGCATTAAAGCTATCTCTCAGGTGATCAATGTCGGTAACAGTCCTGCTTTCCCACAAGGTGGTAGAAATCCAGTTGCTCCACCATCCTTCCCAGATGGCTCTTCTCCTCCAACTGTTAAAACCCGTTTGTGCAGCAAGTATAATTCAGCTGGAGGTTGCAAATTTGGTGACAAATGTCACTTTGCCCATGGTGAGTGGGAGCTTGGCAAGCCTACAGCCCCGTCTTATGAAGATCCTCGTGGCTTTGGACAAATGCAAGGCAACAGGATTGGGGGCCGAGTTGAGCTCCCACCTCAAGGTCATGGAGCTGCCGCCAGCTTTGGAGCCTCGGCTACTGCAAAGATTAGTATCAATGCATCTCTCGCCGGAGCTGTCATTGGAAAAAATGGTGTCAACTCTAAGCAAATTTGTCGCATAACTGGAGCTAAACTTTCTGTCAGGGATCATGGCTCAGATCCTAACCTTAGGAACATTGAGCTTGAAGGCAGTTTTGATCAGATCAAACAAGCCAGCGCCATGGTTCATGAACTTATTCTAAATGTCAGTTCTGCTGCCTCTGGACCTCCAATGAAAAACTTCACTTCACAGACTTCTGCCCCTGCAAACAACTTCAAGACTAAGATGTGTGAAAACTTTGCCAAAGGTACCTGCACATTTGGGGACAGGTGCCACTTTGCACATGGACCAAATGAATTACGCAAGTCTGGGATATGA 903 0.4707 MDRKRGRPGAPAFNTNGASKKFKPEMESFTSGIGSKSKPCTKFFSTSGCPFGEGCHFLHYVPGGIKAISQVINVGNSPAFPQGGRNPVAPPSFPDGSSPPTVKTRLCSKYNSAGGCKFGDKCHFAHGEWELGKPTAPSYEDPRGFGQMQGNRIGGRVELPPQGHGAAASFGASATAKISINASLAGAVIGKNGVNSKQICRITGAKLSVRDHGSDPNLRNIELEGSFDQIKQASAMVHELILNVSSAASGPPMKNFTSQTSAPANNFKTKMCENFAKGTCTFGDRCHFAHGPNELRKSGI* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1568 300 Pfam KH domain 176 238 IPR004088 GO:0003723
Lan4g1568 300 Pfam RNA-binding, Nab2-type zinc finger 39 59 - -
Lan4g1568 300 MobiDBLite consensus disorder prediction 1 30 - -
Lan4g1568 300 SMART kh_6 172 242 IPR004087 GO:0003676
Lan4g1568 300 CDD KH-I 177 238 - -
Lan4g1568 300 Gene3D K Homology domain, type 1 169 262 IPR036612 GO:0003723
Lan4g1568 300 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 267 292 IPR000571 GO:0046872
Lan4g1568 300 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 103 128 IPR000571 GO:0046872
Lan4g1568 300 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 9 299 - -
Lan4g1568 300 ProSiteProfiles Zinc finger C3H1-type profile. 34 62 IPR000571 GO:0046872
Lan4g1568 300 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 164 243 IPR036612 GO:0003723
Lan4g1568 300 SMART c3hfinal6 34 61 IPR000571 GO:0046872
Lan4g1568 300 SMART c3hfinal6 266 292 IPR000571 GO:0046872
Lan4g1568 300 SMART c3hfinal6 101 128 IPR000571 GO:0046872
Lan4g1568 300 SUPERFAMILY CCCH zinc finger 266 296 IPR036855 GO:0046872
Lan4g1568 300 ProSiteProfiles Zinc finger C3H1-type profile. 101 129 IPR000571 GO:0046872
Lan4g1568 300 ProSiteProfiles Type-1 KH domain profile. 173 237 - -
Lan4g1568 300 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 14 9 299 - -
Lan4g1568 300 Gene3D - 96 133 - -
Lan4g1568 300 Gene3D - 263 298 - -
Lan4g1568 300 SUPERFAMILY CCCH zinc finger 99 132 IPR036855 GO:0046872
Lan4g1568 300 ProSiteProfiles Zinc finger C3H1-type profile. 266 293 IPR000571 GO:0046872
Lan4g1568 300 SUPERFAMILY CCCH zinc finger 35 60 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1568 Lan-Chr4 24725275 24730262 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1568 35 140 C3H Transcription Factor Family AT1G68200 26.415 4.54e-06 45.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lan4g1568 KH_1 2.6e-11 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1568 - - gmx:100818781 508.834
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0570 8 7883869 7887701 Lan4g1568 4 24725275 24730262 LSH
Lan20g0332 20 2284939 2289663 Lan4g1568 4 24725275 24730262 LSH