Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1563 ATGTATTCTTCTTCATCTTCTTCTTCCTCTTTTCAATCCGGGTTGACCCGTTACGGTTCTGCCCCCAGTTCTCTCCTTACCACCGCCGTTGACGCCGTCATCAGCGCCGGATCCCACCCTTTTCCTCCACGATACTTCTCCGGTGACTCGTCGGAACCGAGCTCGCTGGCGTTGGGCGGAGGATCAACCAATTTGGTTCGTCAGAAAAGCTCCCCCGCTGGCTTCCTCAACCACCTCGATAATGCAGGCTTTACAATCACAAGGGGTGCCTCGACCTACACCTCCCATGGTCATGTCTCTAATGGCTCAAGGCTGAAGACTCAATTGAGCTTCACAGGCCAAGATTCTCTTTCTCAGATATCAGAGGTGAATGAGAATATCGAGGAGGGCACCACTTCCGATAATGGCCACCGTAGACCTTTGCATTCGTATGCTAACACTAGCTTTGGAATGGAACCTTGGGATAATTCTAATTCCATTGTCTTCTCCGCCCCGCCAACCAAACGGTCTAAGAATATGGATGGTGACATTCTGAATTGTCTCGATGCCTTGGAATCTCAGTTTAGTTTGCCACAAACAACTCTGGAAATGGCAACAGTGGAGAAGCTATTGCATATTCCTGAGGATTCTGTTCCTTGTAAAATCCGTGCTAAGCGAGGCTGTGCTACTCATCCACGTAGTATTGCTGAAAGGGAGAGAAGAACTAGAATAAGTGGGAAGCTGAAGAAATTACAGGACCTTGTACCTAATATGGATAAGCAAACAAGCTATTCAGACATGCTAGATTTGGCTGTTCAACATATTAAAGGTCTTCAAAGTCAAGTTCAGAAACTTCACCATGAACTTGAGAACTGCACTTGTGGATGCAAAGAAAGCACGTGA 882 0.4705 MYSSSSSSSSFQSGLTRYGSAPSSLLTTAVDAVISAGSHPFPPRYFSGDSSEPSSLALGGGSTNLVRQKSSPAGFLNHLDNAGFTITRGASTYTSHGHVSNGSRLKTQLSFTGQDSLSQISEVNENIEEGTTSDNGHRRPLHSYANTSFGMEPWDNSNSIVFSAPPTKRSKNMDGDILNCLDALESQFSLPQTTLEMATVEKLLHIPEDSVPCKIRAKRGCATHPRSIAERERRTRISGKLKKLQDLVPNMDKQTSYSDMLDLAVQHIKGLQSQVQKLHHELENCTCGCKEST* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1563 293 Pfam Helix-loop-helix DNA-binding domain 226 272 IPR011598 GO:0046983
Lan4g1563 293 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 224 286 IPR036638 GO:0046983
Lan4g1563 293 CDD bHLH_AtbHLH_like 226 278 IPR045239 -
Lan4g1563 293 PANTHER TRANSCRIPTION FACTOR BHLH129 14 286 - -
Lan4g1563 293 Gene3D - 222 290 IPR036638 GO:0046983
Lan4g1563 293 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 221 271 IPR011598 GO:0046983
Lan4g1563 293 SMART finulus 227 277 IPR011598 GO:0046983
Lan4g1563 293 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 14 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1563 Lan-Chr4 24684907 24688449 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1563 65 291 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G05805 57.143 6.28e-80 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan4g1563 HLH 8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1563 - - lang:109353868 403.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0567 8 7846779 7850976 Lan4g1563 4 24684907 24688449 LSH