Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1562 ATGTCAGTTTTACATCAATGCCCTTTCAACTCTCCCAGGTTGGTTATGAACAAGGTCTTGTCCAAATCTCAACATGAAGGTGATGGAGCAGTTGTTAGAAGAGGCATTGGAAGAAGCGAGTTACCAAGATTGGATCCATTTCTCATGTTAGATTACTTCTCAGTAACCCCTCCTGCAGGGTTTCCTGACCATCCACACAGAGGTTTTGAGACTGTCACCTACATGCTACAGGGAGGAATAACTCATCAAGATTTTGCTGGACGCAAGGGTACAATAAGAACTGGTGATGTTCAGTGGATGACAGCAGGCAGAGGAATAGTTCACTCTGAAATGCCTGCAGGAGCAGGAACTCACAAGGGAATACAACTATGGATTAATTTATCTGCAAGAGAAAAAATGATTGAACCTAACTATCAAGAACTTCTAAGTGAGGACATACCAACAGCAGAAGAAGATGGTGTTGAAGTGAAAGTTATAGCAGGAGAATCAATGGGACTTCATTCACCAGTTTACACTAGAACTCCAACAATGTTCCTTGATTTTACTCTCAACCCTGGTGCAGAATTGCACCAAACTATTCCACACTCATGGAATGCCTTTGTTTATGTGATTGATGGTGAAGGAGTTTTTGGTTTCCAAGGCTGCACACCAATTACAAGTCACCATGTCCTAGTGTTGAGCCTAGGTGATGGTGTCAGTGTATGGAATAAGTCTTCAAATGCATTAAGGTTTGTGCTTATTGGAGGACAACCACTGAATGAGCCAGTGGCACAGTATGGTCCATTTGTGATGAATACACAATCTGAAATTGAGAAAACTATTCAAGATTATCACTATAGTAAGAATGGGTTTGAAAATGGAAAATCTTGGAGATCTCAATAG 882 0.4104 MSVLHQCPFNSPRLVMNKVLSKSQHEGDGAVVRRGIGRSELPRLDPFLMLDYFSVTPPAGFPDHPHRGFETVTYMLQGGITHQDFAGRKGTIRTGDVQWMTAGRGIVHSEMPAGAGTHKGIQLWINLSAREKMIEPNYQELLSEDIPTAEEDGVEVKVIAGESMGLHSPVYTRTPTMFLDFTLNPGAELHQTIPHSWNAFVYVIDGEGVFGFQGCTPITSHHVLVLSLGDGVSVWNKSSNALRFVLIGGQPLNEPVAQYGPFVMNTQSEIEKTIQDYHYSKNGFENGKSWRSQ* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1562 293 CDD cupin_pirin_C 175 251 - -
Lan4g1562 293 SUPERFAMILY RmlC-like cupins 13 291 IPR011051 -
Lan4g1562 293 Pfam Pirin C-terminal cupin domain 178 282 IPR008778 -
Lan4g1562 293 PANTHER PIRIN-LIKE PROTEIN 3 293 - -
Lan4g1562 293 PIRSF Pirin 11 291 IPR012093 -
Lan4g1562 293 CDD cupin_pirin_N 30 127 - -
Lan4g1562 293 Gene3D Jelly Rolls 26 278 IPR014710 -
Lan4g1562 293 Pfam Pirin 33 125 IPR003829 -
Lan4g1562 293 PANTHER PIRIN-RELATED 3 293 IPR012093 -
Lan4g1562 293 Gene3D Jelly Rolls 147 252 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1562 Lan-Chr4 24681075 24683511 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1562 12 288 Calmodulin-binding Proteins AT3G59220 63.799 1.95e-128 365
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1562 K06911 - gmx:100775597 467.618