Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1552 ATGCATTTCTCAAAGCTAGATGACTCTCCTATGTTTCGCAAACAGATACAATGCATGGAGGAAGGTGTTGAATCATTGAGAGAGAGAAGTTTGAAGTTCTACAAGGGGTGTAGAAAATACACTGAAGAACTTGGGGAGGCATATGATGGAGATATAGCATTTGCAAGCTCTCTGGAAATGTTTGGTGGAGGGCATAATGACCCACTCAGTGTGGCTTTTGGAGGCCCTGTTATGACCAAATTCACTATAGCCTTTAGAGAAATTGGGACATACAAGGAAATCCTTCGCTCCCAGGTTGAGCATATGTTAAGTGACAGGCTGTTTCAGTTTGTCAATATTGATTTGCAAGAGGTTAAGGAAGCACGGAAATGCTTTGACAAGGCTAGCCTTATATATGACCAGGCTCGTGAAAAGTTTTTGTCACTGAGAAAAGGCACAAAAAGTGATGTTGCTACTGCCCTAGAAGTGGAGCTTCATAATGCAAGATCCTCATTTGAGCAAGCTCGGTTTAATTTGGTTACTGCCTTGTCAAATGTTGAAGCAAAGAAGAGATTTGATTTTTTGGAAGCAGTCAGTGGGACAATGGATGCTCATCTTCGCTACTTCAAACAGGGTTATCAATTGTTGCACGAAATGGAGCCATATATTAATCAGGTCTTGAATTATGCTCAGCAATCAAGAGAAAGGTCCAACTATGAGCATGCAGCTCTCAATGAAAGAATGCAAGAGTACAAACGGAAGATCGATCGAGAGAGTAGGTGGTTTTCAAATGGTTCTAAAGGGTCTCCTAATGGTGATGGCATACAAGCCATTGGTAGAAGTTCACATAAGATGATAGAGGCAGTTATGCAATCTTCTGCAAAGGGAAAGGTTCAAACTATTCGACAAGGGTATCTTTCGAAGCGTTCCTCAAACCTAAGGGGAGACTGGAAAAGGAGGTTTTTTGTTCTTGATAGTCGGGGAATGCTGTATTACTATCGTAAACAGAACAACAAATCTACTGGGCCTAGCAGTCAACATTCTGGTCAGAGGAATAGTTCTGAGCTTGGTTCTGGACTTCTAAGTCGATGGCTGTCTTCTCATTATCATGGTGGGGTACATGATGAGAAATCTGTTGCTCATCACACTGTGAACCTGCTTACATCCACAATCAAAGTTGATGCAGACCAATCAGATTTAAGATTTTGCTTCAGAATCATTTCGCCTACAAAGAACTACACTTTACAGGCAGAGAGTGCTCTGGACCAAATGGATTGGATTGAGAAGATAACAGGTGTTATTGCCTCATTGCTGAGTTCTCAAATTCCAGAAAGGTATTTTCCGGCAAGTCCGATGGGAAATGGTTATCATAGGTCTGCCAGTGAGAATAGTTATTTTGGAAGTTCAGGTTTTGATCACTCTGCTGCAGAAGAACGTGTAGTAGATAGAAGCCTTGCTACTGCACATATGGAACGCCCCTCAAGAAGTTTGCTGCAGCAGCAATCCTGTACTAAAAATGAGAAGACAATTGATATGTTGCGAAGAGTTTCCGGGAATGATAAATGTGCTGATTGTGGCGCTCCAGAACCTGATTGGGCATCACTAAATCTCGGCATACTTGTTTGCATTGAGTGTTCTGGTGTTCACCGAAATCTTGGTGTGCACATATCAAAGGTCAGGTCTCTTACATTGGATGTTAAAGTTTGGGAACCTTCTGTGATAAGCTTGTTTCAGTCTCTTGGGAATACTTTTGCCAACTCAATCTGGGAGGAACTACTGGAACTGAGGAGTGCCTTTCAGGTTGATCTTGTTCCCACAGGAAAACCTTGTCAATCCGATTCTCCATCTGTGAAGGAAAAGTTCATCCGTGCAAAGTATGCAGAAAAGCTTTTTGTTCGCAAGCCGAAGGACAATCAATACTATCTCCCGGTGGCACAACAGATCTGGGAGGCTGTTCATACTAATGACATAAAAGCTGTATACCGCCACATCGTTATTTCTGATGTTGACATCAATGCTTCTTATGAGCAAAATTGCAGCAATTCTTTAACCCTTGCCAGTGTAATGTTACTACAAGGGCAGGCAAGCCAGGATCACGGTTCTACATTAGCTAGGAGCTCACTGGACTTGTCCTCTACTAGCTCTTTGAACTCGGTGGGCATTAAAGAAGGCCGGACACTGGACAATCTAGTCAGGTGCAGCCTACTTCACCTTGCTTGTGAAAGTGCAGATATTGGTATGCTGGAGCTCCTCCTACAGTACGGTGCAAATATTAATGCAAATGATCTGAAAGGTCAAAAACCACTACATCGCTGTATTCTCAATGGCAAATCTGCATTTGCAAAATTACTTCTTTCAAGGGGGGCTGATCCTCGAGCGGTCGGTGAGGAGGAAAGAACTCCGATTAAGTTTGCTGCACCGTCAAACTTCGAGGACAGTGAGGTCTTTGCTCTGTTGTCTGAATGGAATGGATTGCATTGGTAG 2463 0.4283 MHFSKLDDSPMFRKQIQCMEEGVESLRERSLKFYKGCRKYTEELGEAYDGDIAFASSLEMFGGGHNDPLSVAFGGPVMTKFTIAFREIGTYKEILRSQVEHMLSDRLFQFVNIDLQEVKEARKCFDKASLIYDQAREKFLSLRKGTKSDVATALEVELHNARSSFEQARFNLVTALSNVEAKKRFDFLEAVSGTMDAHLRYFKQGYQLLHEMEPYINQVLNYAQQSRERSNYEHAALNERMQEYKRKIDRESRWFSNGSKGSPNGDGIQAIGRSSHKMIEAVMQSSAKGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQNNKSTGPSSQHSGQRNSSELGSGLLSRWLSSHYHGGVHDEKSVAHHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQIPERYFPASPMGNGYHRSASENSYFGSSGFDHSAAEERVVDRSLATAHMERPSRSLLQQQSCTKNEKTIDMLRRVSGNDKCADCGAPEPDWASLNLGILVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVISLFQSLGNTFANSIWEELLELRSAFQVDLVPTGKPCQSDSPSVKEKFIRAKYAEKLFVRKPKDNQYYLPVAQQIWEAVHTNDIKAVYRHIVISDVDINASYEQNCSNSLTLASVMLLQGQASQDHGSTLARSSLDLSSTSSLNSVGIKEGRTLDNLVRCSLLHLACESADIGMLELLLQYGANINANDLKGQKPLHRCILNGKSAFAKLLLSRGADPRAVGEEERTPIKFAAPSNFEDSEVFALLSEWNGLHW* 821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1552 820 SUPERFAMILY BAR/IMD domain-like 6 315 IPR027267 -
Lan4g1552 820 SMART ANK_2a 757 786 IPR002110 GO:0005515
Lan4g1552 820 SMART ANK_2a 724 753 IPR002110 GO:0005515
Lan4g1552 820 SUPERFAMILY PH domain-like 293 438 - -
Lan4g1552 820 Pfam BAR domain of APPL family 6 233 - -
Lan4g1552 820 SMART 5bar 11 218 IPR004148 GO:0005515|GO:0005737
Lan4g1552 820 Gene3D Arf GTPase activating protein 481 632 IPR038508 -
Lan4g1552 820 SUPERFAMILY Ankyrin repeat 722 813 IPR036770 -
Lan4g1552 820 Gene3D - 285 438 IPR011993 -
Lan4g1552 820 SMART arf_gap_3 500 632 IPR001164 GO:0005096
Lan4g1552 820 Pfam PH domain 294 427 IPR001849 -
Lan4g1552 820 CDD PH_ACAP 295 432 - -
Lan4g1552 820 PRINTS HIV Rev interacting protein signature 512 531 IPR001164 GO:0005096
Lan4g1552 820 PRINTS HIV Rev interacting protein signature 531 548 IPR001164 GO:0005096
Lan4g1552 820 PRINTS HIV Rev interacting protein signature 554 575 IPR001164 GO:0005096
Lan4g1552 820 Pfam Putative GTPase activating protein for Arf 501 627 IPR001164 GO:0005096
Lan4g1552 820 Gene3D - 633 816 IPR036770 -
Lan4g1552 820 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD1 1 814 - -
Lan4g1552 820 ProSiteProfiles Ankyrin repeat region circular profile. 757 783 - -
Lan4g1552 820 ProSiteProfiles ARF GTPase-activating proteins domain profile. 500 632 IPR001164 GO:0005096
Lan4g1552 820 SUPERFAMILY ArfGap/RecO-like zinc finger 499 627 IPR037278 -
Lan4g1552 820 ProSiteProfiles PH domain profile. 292 428 IPR001849 -
Lan4g1552 820 ProSiteProfiles Ankyrin repeat profile. 757 789 IPR002110 GO:0005515
Lan4g1552 820 ProSiteProfiles Ankyrin repeat profile. 727 756 IPR002110 GO:0005515
Lan4g1552 820 Gene3D Arfaptin homology (AH) domain/BAR domain 4 250 IPR027267 -
Lan4g1552 820 Coils Coil 227 247 - -
Lan4g1552 820 CDD ArfGap 503 619 - -
Lan4g1552 820 Pfam Ankyrin repeats (many copies) 727 778 IPR002110 GO:0005515
Lan4g1552 820 CDD BAR_SFC_plant 14 215 IPR035670 -
Lan4g1552 820 MobiDBLite consensus disorder prediction 329 348 - -
Lan4g1552 820 ProSiteProfiles Ankyrin repeat region circular profile. 727 755 - -
Lan4g1552 820 PANTHER CENTAURIN/ARF 1 814 IPR045258 GO:0005096
Lan4g1552 820 SMART PH_update 293 430 IPR001849 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1552 Lan-Chr4 24604914 24613181 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1552 504 626 C2H2 Transcription Factor Family AT4G21160 45.238 1.44e-22 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1552 K12489 - gmx:100798227 1342.79