Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1542 ATGTACTCTCAGAATTTGATACTCACCGCAGAAAACCCTAGACACTCGGCGGCGTTTCAACAGCCACTACCTCCGGCCACTGCGAAAGCCCTCATGAGCAATGAGAATATCGCGCAGAAGCCTCCCCCTTCGATTCTCGTGGGTCGCTTCAAGGCACTGCTCAAGCAGCGTGACGACGAACTTAGGGATTTTCCCGGTGCCCCCGTGCCGCCACCTACCACCGACGAAATTGTTGAGATTTACGAGATGCTGTTGTCGGAGCTCACGTGCAATTTGAAGCCTATTATCACCGATCTCACAATCATTGCTGAACAGCAGAGGGAACACGCTAAGGGTATTGCTGATGCAATTTGCGCTCGGATTCTCGAGGTGCCTGTGGATCAAAAGTTACCTGCACTCTATCTTTTGGACAGTATTGTGAAGAATTATGGTCAAGAATATGTTAGATACTTCTCTTTACGTTTGCCAGAAGTTTTCTGTGAGGCATATAGGCAAGTCCAGCCTAGTTTGCATCCTGCTATGCGCCATCTGTTTGGGACGTGGTCAAAAGTCTTCCCACCTTCTGCCCTACGCAAGATTGAAGCTCAATTGCAATTTTCTCAAGCTGTTAATAATCAATCATCTACCATGAATTCCCTCAGGGCATCTGAATCTCCTCGACCTAGTCATGGCATTCATGTTAATCCAAAGTACTTGCGACAGTTAGATCGCTCAACTGTGGATAGTGTTGGTGGTGAAAAGTTGGACTCATCAGGAAAGGCTAGCAATACAAATTTTGGTCTTGTTGCCAATGAATACGCAGTTGGCAATTCTGCTGCCAGGATAGTCGAGAGAGAGTCTCCTCGTCCATCTGTTGATTATGGAATAACCAAAGCATTGGGTAGAGATGAAGAGTTGAGTGAATGGCAGCTAAAGCAGTATTCTGGCGATGGTCTAAATCGGTTTCAAACTTCAATGACACACAGCCTTATTAATGGACATCAGCGTCAAAGTCCAAGAGCACTGATTGATGCGTATGGATGTGACAAAAGCCATGAAACTTCAAGCAATAAGCGTTTGTTAGTTGAACGGCTGGACAGAAATGGTAAAGATAAGGTGTTGTCAACATCATGGCAGAATACTGAAGAGGAGGAGTTTGATTGGGAAGATATGAGTCCAACATTAGTAGACCATAGTAGGATTAGTGGTTTGTTGCCATCAACAATTGGTTTCCCCAGGGAAAGGCCTGGTATTATTGCAGGTAATGCAACTTCGCCAGAGCAAGATATCAGGAAGGGTTGGTCTAGCGGGTCTCAGCTTCCTCCAGTGGACGATTCTTCTGTTACAGCAGAAGACACATTTCCTTCTTCGGCTCATGGCCATGTCTTTGTGGGTCAGATATCTGGTTTCCAAAATCAAATAAATCAGAGTCTGGGGTCCTGTCAACCTCGTGAAGCTTGGAAGATTTCTCATCATCCATCTAATTCTTCACAATACTTATTTAATATTAGAGGACAACCAAGGAGTCTTTTGATGCCCCCTACTGATAACGTTCCCAGTACAAATGAAATCCCATTTGGGATTCGACCTGCAGTGTCAAGGATTTCTGGTCTTGCCTCCAATATGGAGATTCGTCCACCAGTTTTACCGGCATCTTTTGACATAAGGCCTTCAGTAAATCTGCATGCCACTCGTCCTCCCACCTTAAATCCAATATTTCCATTGCCAAGCCATTTTAGGAGTCAATTTGAAGCTATGAATACAAGTAACCCCATTGTGAATCATGGTCCAAGTAAATCTCCAAATATGACTGAACAGTTTCTGGACAGTGCTGAGAACAAGGATACAGGTAAAGCAAATATACATCAGTTGCCTAATCATTTTGCTGGACTAATTTCACCCAACCAGCAAAACCATGGACAAGTATCACAACTGCAGTTTTTTCCACCTCGGGATCCATCTGTCCCACCATATAGTCATGGAAGCTCTTTCAGAGGACGTGGTGCTCCTCTAAGTACAGCCATGTCAAATCCAATGTCTGTTTTACAATTCCCTTTACCAGCCCAAGGTGTTGCAAATAACTCCTTACATTTTCAACCGGGATCCCATCCTCCTCTACCTCCAGGTCGTCCTTGTGCTCCATCACAAATGATGCTTCATCCAAATGCTAGTCCATTTATGCCAAATCAACAGCCAACTGCTGCATATTCTAATTTAATTAATTCACTAATGTCTCAAGGCATGATCTCATTGGGTAACCAGCTCCCTCCACAGGATTCTGTTGGAACTGAGTTTAATCCAGATATTCTGAAGCTTCGTCACGAATCTGCTATCAATGCTTTATATGGTGATCTCCCTAGACAATGCACCACTTGTGGGCTACGATTCAAATGCCAAGAGGAGCACAGTAGTCATATGGACTGGCATGTGACCAAGAACCGGATGTCTAAAAACCGTAAGCAGAAGCCATCTCGTAAGTGGTTTGTGAGTGACAGGATGTGGCTTAGTGGTGCGGAGGCTTTGGGAGCAGAATCAGTTCCCGGTTTTTTGCCAACTGAGGTAGTAGATGAAAAGAAAGATGATGATGAGTTGGCAGTACCAGCTGAAGAGGACCAAAATACATGTGCATTATGTGGAGAGCCTTTCGATGAGTTTTACAGTGATGAAATGGAGGAATGGATGTATAGAGGAGCTGTATACCTCAATGCACCCACAGGAACAACACCTGGCATGGACAGGTCACAGTTAGGGCCCATTATTCATGCTAAATGCAGATCAGAATCTACTGTGTCCCCCTCTGAAGATTTTGCACTGGATGCAGGGGGTGCCAATGAAGAGGGTAGTCAAAGAAAACGCATGCGGAGTTGA 2847 0.4478 MYSQNLILTAENPRHSAAFQQPLPPATAKALMSNENIAQKPPPSILVGRFKALLKQRDDELRDFPGAPVPPPTTDEIVEIYEMLLSELTCNLKPIITDLTIIAEQQREHAKGIADAICARILEVPVDQKLPALYLLDSIVKNYGQEYVRYFSLRLPEVFCEAYRQVQPSLHPAMRHLFGTWSKVFPPSALRKIEAQLQFSQAVNNQSSTMNSLRASESPRPSHGIHVNPKYLRQLDRSTVDSVGGEKLDSSGKASNTNFGLVANEYAVGNSAARIVERESPRPSVDYGITKALGRDEELSEWQLKQYSGDGLNRFQTSMTHSLINGHQRQSPRALIDAYGCDKSHETSSNKRLLVERLDRNGKDKVLSTSWQNTEEEEFDWEDMSPTLVDHSRISGLLPSTIGFPRERPGIIAGNATSPEQDIRKGWSSGSQLPPVDDSSVTAEDTFPSSAHGHVFVGQISGFQNQINQSLGSCQPREAWKISHHPSNSSQYLFNIRGQPRSLLMPPTDNVPSTNEIPFGIRPAVSRISGLASNMEIRPPVLPASFDIRPSVNLHATRPPTLNPIFPLPSHFRSQFEAMNTSNPIVNHGPSKSPNMTEQFLDSAENKDTGKANIHQLPNHFAGLISPNQQNHGQVSQLQFFPPRDPSVPPYSHGSSFRGRGAPLSTAMSNPMSVLQFPLPAQGVANNSLHFQPGSHPPLPPGRPCAPSQMMLHPNASPFMPNQQPTAAYSNLINSLMSQGMISLGNQLPPQDSVGTEFNPDILKLRHESAINALYGDLPRQCTTCGLRFKCQEEHSSHMDWHVTKNRMSKNRKQKPSRKWFVSDRMWLSGAEALGAESVPGFLPTEVVDEKKDDDELAVPAEEDQNTCALCGEPFDEFYSDEMEEWMYRGAVYLNAPTGTTPGMDRSQLGPIIHAKCRSESTVSPSEDFALDAGGANEEGSQRKRMRS* 949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1542 948 ProSitePatterns Zinc finger C2H2 type domain signature. 782 802 IPR013087 -
Lan4g1542 948 Pfam CID domain 91 192 IPR006569 -
Lan4g1542 948 MobiDBLite consensus disorder prediction 414 447 - -
Lan4g1542 948 MobiDBLite consensus disorder prediction 918 948 - -
Lan4g1542 948 Gene3D - 71 199 IPR008942 -
Lan4g1542 948 ProSiteProfiles CID domain profile. 73 201 IPR006569 -
Lan4g1542 948 CDD CID_Pcf11 81 198 - -
Lan4g1542 948 SUPERFAMILY ENTH/VHS domain 73 199 IPR008942 -
Lan4g1542 948 MobiDBLite consensus disorder prediction 421 447 - -
Lan4g1542 948 PANTHER POLYADENYLATION AND CLEAVAGE FACTOR HOMOLOG 4 40 923 - -
Lan4g1542 948 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 40 923 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Lan4g1542 948 SMART 558neu5 76 198 IPR006569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1542 Lan-Chr4 24521124 24527491 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1542 671 948 C2H2 Transcription Factor Family AT4G04885 61.484 2.97e-106 347