Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1541 ATGGCTGATTTGGTAATTGGTAACAGAGTTGAAGGCAACGAGATGATAATGGAAGAAGCTCCTAATAATTCTTCTGATGATGATCAAGCTCAACAACAACAGCAGCAACAAGAAGAAGAAGAAGCAGACCCAAACCAACCAGCCAAGAGAGCAAAGAGATACAACCGTCATAGCGAAGAACAAATCCAACAAATGGAAGAGTTCTTCAAGGAATGCCCTCACCCAAATGATAATCAAAGGAAAGAGTTAAGCAAACACCTCAAGTTAGACCCTTCTCAAGTAAAGTTTTGGTTCCAGAACAAGCGGACACAGGTTAAGGCTCAAGTTGAACGCTTAAACAATCAACGTTTGAATGGAGAGATTGAGAACCTTCGTGCTGAGCTCGAAAGGTGTCAAGAGGCACTAAAGAAAGCAACATGCCCTAACTGTGGAGGGCCCTCTAGTTATGGTGAAATGTCATTTGATGAGCACCATTTGAGGATGGAGAATACTCGGTTAAAAGAAGAGGTTCAAAGATTGTCAGGAATGACGGGCAATCATGTTGGAAATGTTGCGAGTTCCTCCTACACAAACGTGTCATCATTTCAAAATCGCATGCCCTCACATGATGTAGGAATTGGGAGCTATGGAGTAATACCAAACATGGTTGGGGAAATGTATGGTACAAATGGAAGTGGTAGTTACCTTCCTACCCCACTCCAAGTTGCTCCTGATCCTAAAAGAATGATGATTGTGGAGCTTGTTGATGCAGCAATGGAGGAACTCACAAAGTTGGCCATTGTTGGAAACCCCTTATGGTTCCCTCAGAACAACCAACTTGGTACTGAGATTTTAAATGAAGATGAATACTTTAGGACTTTCCATAGTGGATTTGGTCCAAAACTCTTGGGGTTCAAGTCTGAAGCTTCAAGGGATTCTGTGGTGATTATCAAAAATAATATCAACCTCATGGAAATCCTTATGGATGTGAAACAATGGTCAAAAGTGTTTTGTGATATTGTTTCAAGATCCATGACACATGAAGTCCTATCACAAGGAGTAACAGGAAACTATAACGGAGTCTTGCAAGTGATGTCAGCTGAGTTTCAGGTTCCATCACCAATGGTTCCTACTCGTAGAGCTTATTTTGCTAGGTACTGTAAGCAACACCAAGATGGGTCATGGGTTCTGGTTGATGTTTCCTTAGATGATATTCGACCTAATGCAATCTCAACTTGCCGAAGAAGGCCCTCTGGTTGTTTGATTCAAGACTTGTCAAGTGGTTACTCAAAGGTTACTTGGATAGAACATGTTGAAGTGGACGAGAGAACTAGTTATAATCTTTATGAAAACTTTGTTAATTCTGGCTTTGGCTTTGGAGCTAAAAGGTGGCTCGCGTCATTGCATAGACACTGCCAACGCCTTGCTATTACAAAGCCCATAACAATGCTGCACCATGGTGTTATAACTGGTCCAGAGGAAAAGCAATTTATAGTGAAGTTGGCAGAAAGAATGAAATGGAGCTTTCTCACCGGTGTGGGCTCTTCTACAGCAGATATTTGGACAACAATATCACCACCTTGTGATAGTGTAAGGATCATGCGCAGAACAAGTATGAATGATCCTGGGAGACCTAGTGGCCTAGTTCTCAATATTGCAACCTCTTTCCGCCTTCAAATTCCTCCTATAAGGGTTTTTACTTTTCTTCGAGATGTAAAATTCAGAAGCCAGTGGGATGTTCTCTGCACATCAGCTCTAGTTCAAGAAAAGGAGCACATAGCAACTGGTAGAGATTCAGGAAATTGTATCTCTCTTATTCAAGTCAATCAACTGCAAAATGAAAATCAGAATATGTTTATACTTCAAGAAAGTTTCACTGATGCTACAGGCTCATATGCAATCTACGCACCCATTGATGTTGGTCCTATGAATGAAGCTTTATGTGGGGGTGACCCAGATTTTATTAGCATGTTGCCCTCAGGTTTTGCTATAGTTCCTGATGAGCCAATATTTTCATCACCACCTCAAGGAGGATCCATAGTTAAAGTTGGACCTAGAGGTTCCCTAATAACTGTGGCATTTCAAATACTAGTTCATAATAAACCCACAGGGAGTCTCTCTCCTAACTCGGTGGCCAGCGTGAACAATTTTCTTGACTTCACAATGAAAAAGATAAAAGATTCAGTCGCTGATGACAGCAACAAGCACTTACTCGGCCCTCAAATTTCACAACAATGA 2217 0.4136 MADLVIGNRVEGNEMIMEEAPNNSSDDDQAQQQQQQQEEEEADPNQPAKRAKRYNRHSEEQIQQMEEFFKECPHPNDNQRKELSKHLKLDPSQVKFWFQNKRTQVKAQVERLNNQRLNGEIENLRAELERCQEALKKATCPNCGGPSSYGEMSFDEHHLRMENTRLKEEVQRLSGMTGNHVGNVASSSYTNVSSFQNRMPSHDVGIGSYGVIPNMVGEMYGTNGSGSYLPTPLQVAPDPKRMMIVELVDAAMEELTKLAIVGNPLWFPQNNQLGTEILNEDEYFRTFHSGFGPKLLGFKSEASRDSVVIIKNNINLMEILMDVKQWSKVFCDIVSRSMTHEVLSQGVTGNYNGVLQVMSAEFQVPSPMVPTRRAYFARYCKQHQDGSWVLVDVSLDDIRPNAISTCRRRPSGCLIQDLSSGYSKVTWIEHVEVDERTSYNLYENFVNSGFGFGAKRWLASLHRHCQRLAITKPITMLHHGVITGPEEKQFIVKLAERMKWSFLTGVGSSTADIWTTISPPCDSVRIMRRTSMNDPGRPSGLVLNIATSFRLQIPPIRVFTFLRDVKFRSQWDVLCTSALVQEKEHIATGRDSGNCISLIQVNQLQNENQNMFILQESFTDATGSYAIYAPIDVGPMNEALCGGDPDFISMLPSGFAIVPDEPIFSSPPQGGSIVKVGPRGSLITVAFQILVHNKPTGSLSPNSVASVNNFLDFTMKKIKDSVADDSNKHLLGPQISQQ* 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1541 738 Pfam START domain 248 467 IPR002913 GO:0008289
Lan4g1541 738 SMART START_1 246 467 IPR002913 GO:0008289
Lan4g1541 738 SMART HOX_1 49 112 IPR001356 GO:0003677
Lan4g1541 738 ProSiteProfiles START domain profile. 237 470 IPR002913 GO:0008289
Lan4g1541 738 ProSiteProfiles 'Homeobox' domain profile. 48 108 IPR001356 GO:0003677
Lan4g1541 738 CDD homeodomain 50 108 IPR001356 GO:0003677
Lan4g1541 738 MobiDBLite consensus disorder prediction 18 41 - -
Lan4g1541 738 ProSitePatterns 'Homeobox' domain signature. 83 106 IPR017970 GO:0000981|GO:0006355
Lan4g1541 738 Gene3D - 298 472 IPR023393 -
Lan4g1541 738 Gene3D - 29 120 - -
Lan4g1541 738 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 36 725 IPR042160 -
Lan4g1541 738 SUPERFAMILY Bet v1-like 485 662 - -
Lan4g1541 738 MobiDBLite consensus disorder prediction 42 58 - -
Lan4g1541 738 Coils Coil 107 134 - -
Lan4g1541 738 CDD START_ArGLABRA2_like 243 466 - -
Lan4g1541 738 SUPERFAMILY Bet v1-like 241 468 - -
Lan4g1541 738 MobiDBLite consensus disorder prediction 1 58 - -
Lan4g1541 738 Pfam Homeodomain 52 106 IPR001356 GO:0003677
Lan4g1541 738 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN PROTODERMAL FACTOR 2 36 725 - -
Lan4g1541 738 SUPERFAMILY Homeodomain-like 44 112 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1541 Lan-Chr4 24498880 24503418 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1541 38 725 Homeobox Transcription Factor Family AT4G21750 54.672 0.0 772
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lan4g1541 START 2.4e-45 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1541 K09338 - fve:101311833 787.334
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0011 17 70966 77520 Lan4g1541 4 24498880 24503418 PCT
Lan4g1541 4 24498880 24503418 Lan17g0011 17 70966 77520 PCT