Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1537 ATGCAAATCTTCGTGAAAACCCTAACCGGAAAGACCATCACCCTAGAGGTGGAGAGCTCCGACACAATCGATAACGTAAAAGCTAAGATTCAGGACAAGGAAGGAATTCCACCTGACCAGCAGCGTCTGATCTTCGCCGGAAAACAGCTAGAGGACGGTCGCACCCTCGCCGACTACAATATCCAGAAAGAATCAACCCTCCACCTCGTCCTCCGTCTCCGTGGAGGAATGCAAATCTTCGTAAAAACCCTCACCGGCAAAACCATAACCCTAGAAGTGGAGAGTTCCGACACCATCGACAACGTAAAGGCGAAGATTCAAGATAAGGAAGGAATTCCACCAGATCAGCAGAGATTGATTTTCGCTGGAAAACAACTTGAAGATGGAAGAACCCTAGCTGATTATAATATCCAGAAGGAATCAACACTTCACCTTGTGTTGAGGCTTAGGGGAGGGATGCAGATTTTTGTGAAGACTTTGACTGGGAAAACCATTACTTTGGAGGTGGAAAGTTCTGATACAATTGATAATGTGAAAGCTAAGATTCAGGATAAGGAAGGTATTCCACCGGATCAGCAGAGGTTGATTTTTGCAGGGAAGCAATTAGAAGATGGAAGGACTTTGGCTGATTATAATATTCAGAAGGAGTCTACTCTTCACCTTGTTCTTCGTCTGCGTGGGGGGTTTTAA 690 0.4522 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1537 229 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Lan4g1537 229 SMART ubq_7 1 72 IPR000626 GO:0005515
Lan4g1537 229 SMART ubq_7 153 224 IPR000626 GO:0005515
Lan4g1537 229 SMART ubq_7 77 148 IPR000626 GO:0005515
Lan4g1537 229 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Lan4g1537 229 Pfam Ubiquitin family 155 226 IPR000626 GO:0005515
Lan4g1537 229 Pfam Ubiquitin family 79 150 IPR000626 GO:0005515
Lan4g1537 229 PRINTS Ubiquitin signature 11 31 IPR019956 -
Lan4g1537 229 PRINTS Ubiquitin signature 32 52 IPR019956 -
Lan4g1537 229 PRINTS Ubiquitin signature 53 74 IPR019956 -
Lan4g1537 229 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Lan4g1537 229 PANTHER UBIQUITIN 1 154 - -
Lan4g1537 229 PANTHER UBIQUITIN 64 228 - -
Lan4g1537 229 PANTHER - 64 228 - -
Lan4g1537 229 PANTHER - 1 154 - -
Lan4g1537 229 SUPERFAMILY Ubiquitin-like 76 152 IPR029071 -
Lan4g1537 229 CDD Ubl_ubiquitin 77 152 - -
Lan4g1537 229 CDD Ubl_ubiquitin 1 76 - -
Lan4g1537 229 Gene3D - 153 229 - -
Lan4g1537 229 Gene3D - 1 76 - -
Lan4g1537 229 Gene3D - 77 152 - -
Lan4g1537 229 CDD Ubl_ubiquitin 153 228 - -
Lan4g1537 229 ProSitePatterns Ubiquitin domain signature. 103 128 IPR019954 -
Lan4g1537 229 ProSiteProfiles Ubiquitin domain profile. 153 228 IPR000626 GO:0005515
Lan4g1537 229 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Lan4g1537 229 ProSiteProfiles Ubiquitin domain profile. 77 152 IPR000626 GO:0005515
Lan4g1537 229 SUPERFAMILY Ubiquitin-like 152 228 IPR029071 -
Lan4g1537 229 ProSitePatterns Ubiquitin domain signature. 179 204 IPR019954 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1537 Lan-Chr4 24476822 24477977 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1537 1 77 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 98.701 1.98e-49 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1537 - K08770 dcr:108214855 444.891