Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1520 ATGGCCAGTTTTGGAGGAACCACACAAAAGTGCATGGCATGTGACAAAACCGTGTACCTGGTTGATAAGCTAACCGCAGATGGCCGTATCTATCATAAGGCTTGCTTCCGATGCCACCATTGCCGGAATACCCTTAAGCTAAGCAACTACTGTTCTTTTGAGGGGGTGCTCTATTGCAGACCTCACTATGATCAACTCTACAAGCGAACTGGTAGCCTTGACAAAAGCTTCGAAGGAACACCCAAAATTCTGAAACAAGAAAAACCAGTCACTGGTAATGAGAATACTAAGGCAATGGCAAACGTGTTCTTGGGCACCAGAGACAAATGTTCGAGTTGCAAAAAGACTGTCTATCCTACTGAGAGGGTTACGATTAATGGTACTCCCTATCACAAGGGCTGCTTCAAATGTACCTATGGAGGTTGCACTATAAACTCAGCAAACTTTGTTACACATGAGGGGAAGCTCTACTGCAAACACCATCACATTCAACTTTTCAAAGAGAAAGGTAATTACAGCCAGCTTGAGAATGAAGTAGAGAAAAATTCTATGACTGAGAACGTCACTGCAATGGGAATTGTTGCTTAA 588 0.432 MASFGGTTQKCMACDKTVYLVDKLTADGRIYHKACFRCHHCRNTLKLSNYCSFEGVLYCRPHYDQLYKRTGSLDKSFEGTPKILKQEKPVTGNENTKAMANVFLGTRDKCSSCKKTVYPTERVTINGTPYHKGCFKCTYGGCTINSANFVTHEGKLYCKHHHIQLFKEKGNYSQLENEVEKNSMTENVTAMGIVA* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1520 195 CDD LIM1_SF3 7 69 - -
Lan4g1520 195 Pfam LIM domain 11 65 IPR001781 -
Lan4g1520 195 Pfam LIM domain 110 165 IPR001781 -
Lan4g1520 195 PANTHER OS06G0237300 PROTEIN 1 192 IPR045268 GO:0051015
Lan4g1520 195 Gene3D Cysteine Rich Protein 105 193 - -
Lan4g1520 195 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 37 77 - -
Lan4g1520 195 ProSiteProfiles LIM domain profile. 108 168 IPR001781 -
Lan4g1520 195 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 102 135 - -
Lan4g1520 195 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 4 36 - -
Lan4g1520 195 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 136 175 - -
Lan4g1520 195 ProSiteProfiles LIM domain profile. 9 69 IPR001781 -
Lan4g1520 195 SMART lim_4 10 62 IPR001781 -
Lan4g1520 195 SMART lim_4 109 161 IPR001781 -
Lan4g1520 195 Gene3D Cysteine Rich Protein 6 75 - -
Lan4g1520 195 ProSitePatterns LIM zinc-binding domain signature. 11 45 IPR001781 -
Lan4g1520 195 PANTHER LIM DOMAIN-CONTAINING PROTEIN WLIM1 1 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1520 Lan-Chr4 24345060 24347054 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Lan4g1520 LIM 8.1e-12 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1520 K09377 - gmx:100306027 360.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan20g0382 20 2650968 2652873 Lan4g1520 4 24345060 24347054 LSH