Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1514 ATGGAGCCTGTTGAAGAATGGAGTTCCCTAAGTGGATTGTACACAGCTGATGAAGCTGACTTTATGAGCCAATTGCTTGATAACTACTCAGTTCCAGGGCAGATATATGAAAATTTCAACATGGAAATTCCATGTGCATCATTGCATGGCCATGAATCAACAATAGTGAATGTTACAGGCATTAATAAAAGTTCACATTTTTCTGAAAATGCTGCCAATGCTAATGTTTTGCATAATAGTAATATATTGCCCAGTATAAGTGGTAGCAGCTGCTACTTGAATGATCCATTAAGCAACACTCGGTATGTGCCTATTGGAACCTCCTTTGTGGATGACAAACTCAGCCCTTATAGCTATCAAGAGAATGAGAACCAATATATAAATGAAAATATTGAAGACTTAGGTGTTGCTGACAAGAGTTTGCAGGCTCACAAGGACTGTGAAGAAGCACTAGTTTCTGAACCAGCAGAAGAGGATATAACCTGCAATCTAGAGAACTCCAGAATAAGATCTAGGAGATCGGTCGAGGCTCATAAGAACAAGAGAAATGTTAAACCAAGGAAGAAACAGAAAACTTCTTCTGCAAGCAACACTGAAGAGGATACAAATGCTGGTATTCAATGGCTGAGCTTGAGCAATTGCTGCTCAGAGGATGATTCCAATGCTTCTCAGGAGATAAATGGAGAAGGGTCTTCAAGCTTGAGCTTGAGCCCGAAAGATTTGAAACATGTCAAGATAAATGGAAAATCAAGGTGTAGTAGAGGCTCTGCTACTGATCCACAAAGTATTTATGCAAGAAGAAGAAGAGAAAGGATAAATGAAAGGTTGAAAATTTTACAAACTCTAGTCCCCAATGGAACAAAGGTGGATATCAGCACTATGCTTGAAGAAGCTGTGGTATATGTGAAGTTTTTACAGCTCCAAATTAAGCTTCTTAGCTCTGATGATCTATGGATGTACGCTCCAATTGCTTACAATGGAATGAACATTGGACTAGACCTGAATCTTACCCCGACCAAACAACCATAG 1029 0.3936 MEPVEEWSSLSGLYTADEADFMSQLLDNYSVPGQIYENFNMEIPCASLHGHESTIVNVTGINKSSHFSENAANANVLHNSNILPSISGSSCYLNDPLSNTRYVPIGTSFVDDKLSPYSYQENENQYINENIEDLGVADKSLQAHKDCEEALVSEPAEEDITCNLENSRIRSRRSVEAHKNKRNVKPRKKQKTSSASNTEEDTNAGIQWLSLSNCCSEDDSNASQEINGEGSSSLSLSPKDLKHVKINGKSRCSRGSATDPQSIYARRRRERINERLKILQTLVPNGTKVDISTMLEEAVVYVKFLQLQIKLLSSDDLWMYAPIAYNGMNIGLDLNLTPTKQP* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1514 342 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 256 305 IPR011598 GO:0046983
Lan4g1514 342 PANTHER TRANSCRIPTION FACTOR BHLH54 5 338 - -
Lan4g1514 342 MobiDBLite consensus disorder prediction 174 189 - -
Lan4g1514 342 Pfam Helix-loop-helix DNA-binding domain 266 306 IPR011598 GO:0046983
Lan4g1514 342 CDD bHLH_AtIND_like 257 319 - -
Lan4g1514 342 SMART finulus 262 311 IPR011598 GO:0046983
Lan4g1514 342 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 5 338 - -
Lan4g1514 342 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 257 321 IPR036638 GO:0046983
Lan4g1514 342 Gene3D - 261 314 IPR036638 GO:0046983
Lan4g1514 342 MobiDBLite consensus disorder prediction 171 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1514 Lan-Chr4 24266869 24268985 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1514 1 332 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 39.895 9.13e-63 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan4g1514 HLH 8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1514 - - ccaj:109795401 364.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0531 8 7544450 7546476 Lan4g1514 4 24266869 24268985 LSH
Lan20g0386 20 2670610 2672420 Lan4g1514 4 24266869 24268985 LSH