Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1513 ATGGAATCCACTCAGATGATTTCTGAAGAATGGTGCTCTCTTAGTGGACTAAACATAGCTGAAGAAGCTGATTTCATGACTCAGTTGCTTGGTGGAAATTCCACCTTAGGGCCAGACCATGAATCCCCAGACACCAATAACACCAATTCATATTTTCCTTCAAATGTTGCAAATACTAATTTCTTCTATTTCTCCCAAGGGGGGAGTAGCTCCAGTGCTGATAGTGGAAATATCTTTTCCACTACAAGTAGTGGAACTTGCTCCTTTGATCCAACATCAAACTTTGACTCCATGCCGATGGATATTTGCTTGGGAGATTCCAACTTTAGTCCACATATTCTTCAATGGAATGATAACTTAAGCCAACAGATAAATGCACTAAGCAGTGATGAAGAGCCAGGTTTAGATCAAGGGAAACCTGTTCTTAATGACTACAATTTTCATGCAGAAGAGGATAAAAACAGAAACCTGGTGAACTCAGAAAAAAGATCAAGGAGGTCAATAGAGGAGGTATCAGAAAACATGATGAATGCCAAATCAAGGAAGATTCCAAAATCTGCTTCTATGAGCAGCTTCAATGAGGAGGATAGAATTAGTATTGGACTCCAAAGGCAAGGTTCTAGAAGCTGCGTTTCAGAAGGTGATTCTGATCCTTCTTTGGAGATAAATGGAGGGGAATCTCCAAGTCTGAGCCCAAAAGATCCCACACCTCCCAATTGTAATAGAAAATCAAGATCTACCACCTCTCCTGCCACTGATCCACAGACCCTTTATGCAAGAAAGAGAAGAGAAAGAATAAATGAAAGGTTGAGAATACTGCAAAGTCTTGTCCCTAATGGAACTAAGGTGGATATTAGCACCATGCTTGAGGAAGCTGTCCAATATGTGAAGTTTTTACAGCATCAAATTAAGCTTCTGAGCTCTGATGACCTATGGATGTATGCTCCAATTGCTTACAATGGAGTCAACATTGGACTAGACTTTATTACAACCAAAGGACTATAG 1005 0.402 MESTQMISEEWCSLSGLNIAEEADFMTQLLGGNSTLGPDHESPDTNNTNSYFPSNVANTNFFYFSQGGSSSSADSGNIFSTTSSGTCSFDPTSNFDSMPMDICLGDSNFSPHILQWNDNLSQQINALSSDEEPGLDQGKPVLNDYNFHAEEDKNRNLVNSEKRSRRSIEEVSENMMNAKSRKIPKSASMSSFNEEDRISIGLQRQGSRSCVSEGDSDPSLEINGGESPSLSPKDPTPPNCNRKSRSTTSPATDPQTLYARKRRERINERLRILQSLVPNGTKVDISTMLEEAVQYVKFLQHQIKLLSSDDLWMYAPIAYNGVNIGLDFITTKGL* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1513 334 MobiDBLite consensus disorder prediction 148 176 - -
Lan4g1513 334 MobiDBLite consensus disorder prediction 177 255 - -
Lan4g1513 334 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 250 299 IPR011598 GO:0046983
Lan4g1513 334 PANTHER TRANSCRIPTION FACTOR BHLH54 35 326 - -
Lan4g1513 334 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 35 326 - -
Lan4g1513 334 SMART finulus 256 305 IPR011598 GO:0046983
Lan4g1513 334 CDD bHLH_AtIND_like 251 313 - -
Lan4g1513 334 Gene3D - 255 308 IPR036638 GO:0046983
Lan4g1513 334 MobiDBLite consensus disorder prediction 148 257 - -
Lan4g1513 334 Pfam Helix-loop-helix DNA-binding domain 260 300 IPR011598 GO:0046983
Lan4g1513 334 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 252 316 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1513 Lan-Chr4 24262151 24263680 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1513 202 326 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 66.142 6.23e-49 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan4g1513 HLH 7.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1513 - - gmx:100816788 342.813
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0530 8 7540385 7541819 Lan4g1513 4 24262151 24263680 LSH
Lan20g0387 20 2675479 2677238 Lan4g1513 4 24262151 24263680 LSH