Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1509 ATGGCCTTAGAGGCTCTGAATTCACCCACACCCTTCCGTGGTAGCAGCTACAAAGAAGAGGAACAACATGAGGTTGATCTTCACGCGTGGACTAAGAGAAAGCGCTCAAAACGACCTCGTCTTGAAAATTCAACCACTGAAGAAGAATACTTTGCTCTCTGCCTCATCATGCTCGCACAAAACGGCAACACCAACACCAAAAACGACAACAAAACCTTTCTTCAACAACAACAACATGAATCATCACCGCCTATGAAGGTGATCAGTCACCGGTGCTCCGTTTGCAACAAAGCTTTTTCATCTTATCAAGCACTTGGTGGACACAAGGCTAGCCACCGCAAGTCCTTATCTGAAAACGCTGCCACCACCGTTGCCACAGTCTCTGCCGCCACCACCAACGACACAGCCACTAAAAAGCTTCACGAATGTTCCATCTGTCACAAGTCTTTCCCTACGGGTCAGGCCTTGGGTGGTCACAAGCGATGCCACTACGATGGTGGCAATAGCAATAGCTACATCAACACAAACAATAGCAGTGCCGTGACGTTCTTTGAGAGCGGCTCATTCTCCCATAGCCACCGTGGATTTGAGTTTGACCTAAACCTGCCGGCACCGTTGACGGAGTTCTGGGATTTGGCGAGGTTCGACGACGAGAAGAAGGTGAAGTTTAATGAAACGGTGTCGCTTGGTTTAGTAAAAAATTGA 705 0.4837 MALEALNSPTPFRGSSYKEEEQHEVDLHAWTKRKRSKRPRLENSTTEEEYFALCLIMLAQNGNTNTKNDNKTFLQQQQHESSPPMKVISHRCSVCNKAFSSYQALGGHKASHRKSLSENAATTVATVSAATTNDTATKKLHECSICHKSFPTGQALGGHKRCHYDGGNSNSYINTNNSSAVTFFESGSFSHSHRGFEFDLNLPAPLTEFWDLARFDDEKKVKFNETVSLGLVKN* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1509 234 ProSiteProfiles Zinc finger C2H2 type domain profile. 90 112 IPR013087 -
Lan4g1509 234 ProSiteProfiles Zinc finger C2H2 type domain profile. 141 163 IPR013087 -
Lan4g1509 234 MobiDBLite consensus disorder prediction 1 25 - -
Lan4g1509 234 ProSitePatterns Zinc finger C2H2 type domain signature. 143 163 IPR013087 -
Lan4g1509 234 ProSitePatterns Zinc finger C2H2 type domain signature. 92 112 IPR013087 -
Lan4g1509 234 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 1 218 IPR044653 GO:0003700
Lan4g1509 234 SUPERFAMILY beta-beta-alpha zinc fingers 90 163 IPR036236 -
Lan4g1509 234 Pfam C2H2-type zinc finger 90 114 - -
Lan4g1509 234 Pfam C2H2-type zinc finger 141 165 - -
Lan4g1509 234 SMART c2h2final6 141 163 IPR013087 -
Lan4g1509 234 SMART c2h2final6 90 112 IPR013087 -
Lan4g1509 234 PANTHER ZINC FINGER PROTEIN ZAT10 1 218 - -
Lan4g1509 234 Gene3D Classic Zinc Finger 87 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1509 Lan-Chr4 24232713 24256666 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1509 1 231 C2H2 Transcription Factor Family AT1G27730 44.141 1.03e-47 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan4g1509 zf-C2H2_6 9.3e-13 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1509 - - gmx:100806788 243.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan20g0390 20 2713096 2714421 Lan4g1509 4 24232713 24256666 LSH