Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1487 ATGGCAATCCACCATCATCAAATGAATGACCAGCTTCAACAACAACAACATAATGAAAATGTTTCATCTGTCCTTGATGCTCTTTACTGTGATGAAGTGAAATGGGAAGAAGAAGAAGATGATGATGATGATGAAAAAGAAGGAAAAGGAGAGTTTTCATCATCAGAAGAGAGTGATGTGACAACAACAACAACAAACAATGACAATGGTTGTCTTCTTTTCCCTCTGCTTTTGTTAGAGCAAGATTTGTTCTATGAAGATGAAGAGTTAAACTTTCTTTTCTCCAAAGAAAAGAATGAACAACAAACCTATTACTCTAGTACTCATAATAATATTAATATGGGTTTAGATGATTCTGCTCTTTGTGTTGCACGTCGTGAAGCATTTGAATGGATACTAAAAGTGAATGGTTATTATGGTTTTTCTGCTCTCACTGCAACACTGGCTTTTACTTATCTAGATAGATTCCTTTCAAGCTTCCATTTTCAAAGGGAGAAGCCTTGGATGATCCACCTTGTAGCTGTTACTTGCATCTCTTTGGCTGCTAAAGTTGAAGAAACTCAAGTTCCTCTTCTCTTAGACCTTCAAGTGCAAGATGCCAAATATGTGTTTGAAGCAAAAACTATTCAGAGAATGGAGTTGCTTGTGTTATCTACGCTTAAGTGGAAGATGCACCCAGTCACACCACTCTCATTTCTAGATCACATTATAAGGAGGCTGGGATTGAAAATCAATCTTCACTGGGAATTTCTTAGGCGCTGTGAACAACTTCTTCTATATGTGCTTTTAGATTCAAGATTTGTGGGTTGTCTTCCTTCTGTATTGGCCACTGCAACAATGCTGCATGTTATAGACCAGATTGGGCACGAGGATGGTTTGAAATACAAAACTCAGCTTCTAAGTGTTCTCAAAATTAGCAAGGAGAAAGTAGATGAGTGTTACAATGGTATTCTCCATCTTTTAGACTCAAATGCCAATAATTATGGTAATAAGAACCCTCTAAAGCGCAAGTATGACCAAATCCCTGGTAGCCCAAGTGGCGTAATTGATGCTTCTTTTAGCTCAGATGGCTCTAACGATTCTTGGGTAGTGGGGTCATCATTATACTCATCACCAGAGGCAGAGCTTTTGTTGAAGAAGAGCAGAACCCAAGGACAACTAATGAAATTGTCACCACATAATAGGGTCATTGTCTGA 1197 0.3826 MAIHHHQMNDQLQQQQHNENVSSVLDALYCDEVKWEEEEDDDDDEKEGKGEFSSSEESDVTTTTTNNDNGCLLFPLLLLEQDLFYEDEELNFLFSKEKNEQQTYYSSTHNNINMGLDDSALCVARREAFEWILKVNGYYGFSALTATLAFTYLDRFLSSFHFQREKPWMIHLVAVTCISLAAKVEETQVPLLLDLQVQDAKYVFEAKTIQRMELLVLSTLKWKMHPVTPLSFLDHIIRRLGLKINLHWEFLRRCEQLLLYVLLDSRFVGCLPSVLATATMLHVIDQIGHEDGLKYKTQLLSVLKISKEKVDECYNGILHLLDSNANNYGNKNPLKRKYDQIPGSPSGVIDASFSSDGSNDSWVVGSSLYSSPEAELLLKKSRTQGQLMKLSPHNRVIV* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1487 398 SMART cyclin_7 130 218 IPR013763 -
Lan4g1487 398 MobiDBLite consensus disorder prediction 36 64 - -
Lan4g1487 398 Pfam Cyclin, N-terminal domain 107 224 IPR006671 -
Lan4g1487 398 CDD CYCLIN 125 217 IPR013763 -
Lan4g1487 398 Pfam Cyclin, C-terminal domain 227 340 IPR004367 -
Lan4g1487 398 Gene3D - 123 225 - -
Lan4g1487 398 SMART Cyclin_C_2 227 357 IPR004367 -
Lan4g1487 398 SUPERFAMILY Cyclin-like 83 225 IPR036915 -
Lan4g1487 398 ProSitePatterns Cyclins signature. 125 156 IPR006671 -
Lan4g1487 398 Gene3D - 226 315 - -
Lan4g1487 398 PANTHER CYCLIN-D3-1 52 372 - -
Lan4g1487 398 PANTHER CYCLINS 52 372 IPR039361 -
Lan4g1487 398 SUPERFAMILY Cyclin-like 228 338 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1487 Lan-Chr4 23982629 23984641 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1487 13 320 Core Cell Cycle Gene Families AT4G34160 53.247 4.72e-106 316
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1487 K14505 - gmx:547740 515.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0498 8 7235861 7238508 Lan4g1487 4 23982629 23984641 LSH
Lan20g0423 20 2949866 2952818 Lan4g1487 4 23982629 23984641 LSH
Lan17g1288 17 21131841 21134031 Lan4g1487 4 23982629 23984641 PCT
Lan18g0991 18 14982289 14984432 Lan4g1487 4 23982629 23984641 PCT