Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1486 ATGGAGTCAGTGCCCTCTGATGTATCTACTTCACCTCCTGTTAAAGACACTGGAGGACAGGCTTCTGCTGCTGTAGTCTCCGGGCAAGATAGTACTGCATACAAGGTACCATCTAGGGTGTCTCCCACTGTCATATCATCTTGGGCCAAAAACTTGAAAGTTTCTCAGTCATTTTCTGGCTCCCAAGATGACTCGTCAAGTGGCAATGCTGGGAAATCGGCTTTTTCACGCATAACTAGTAATATAGGGCTGCGGCTGTCTCCGAAATCTCCTCCTGCGGCAGATGACAGTTCCAGTGAAACAGCTGGCCAATCTAACTTGTTTGGAAGTATTACAAAAGGCCTGGTTGACACTTCTAAGAATGCAGTGAAAGCTGTGCAGGTTAAGGCACGACATGTTGTTTCTCAGAACAAACGCAGATACCAGGAAGGAGGTTTTGATTTAGATTTGACATATATCACAGAAAACATCATTGCTATGGGGTTCCCTGCTGGCGACATGAGCTCTGGGTTTTTTGGTTACGTCGAAGGATTTTACAGAAATCATATGGAAGAAGTGATTAAGTTTTTTGAGACTCACCACAAGGATAAATACAAAGTATACAATCTTTGTTCTGAGCGGCTGTATGATGCATCATTATTTGAGGGGAAGGTTGCTAGCTTTCCATTTGATGACCATAATTGCCCTCCAATTCAACTGATTATATCATTTTGTCAAAGTGCTTACTCGTGGTTGAAGGAAGACATTGAGAATGTTGTGGTTGTCCACTGTAAGGCTGGAATGGCGAGGACTGGGTTGATGATTTCTAGTCTTCTTTTATTCTTAAAGTTTTTCCCAACTGCCGAAGAGTCAATGGATTACTACAATCAGAAAAGATGCATTGATGGAAAAGGGCTTGTTCTGCCTAGCCAGATTAGGTATGTTAAATATTTTGAACGGGTCTTGACTTACTTCAATGGCGAAAACCCATCTGCTCGCAGGTGCATGCTTAGAGGATTTCGGCTCCACAGATGCCCTTACTGGATCAGGCCCTCCATCACTGTCTCAGATCATCGTGGTGTGTTGTTCTCAACCAAAAAGCATCCAAGAACCAAGGAACTTTTGCCAGAAGACATTTGGTTCAGTGCGCCAAAGAAGGGAGTGATGGTCTTTGCTTTGCCTGGAGAACCTGGTCTTACGGAGTTGGCTGGGGACTTCAAAATCCATTTTCATGATCGACAAGGAGATTTTTACTGCTGGTTGAACACAACTATGACAGAAAATCGAAAAGTGTTGAACATCAGTGATCTTGATGGATTTGACAAGAGAAAATTGCCTTCTCCGGGATTTTTGGTTGAGGTTGTGCTTGTGGATTATAATGGTAATGTTGTAACTTACAAACCTGATACTGTGACAAATAAATCAGATGAGAGTTCGAGTAATAATCCCGCCCCAGTTGAAGCGAGCATCATTGCGTTGAATGTGGACAAAGAATCAGGGAGTAACGATAAAGATGATGTGTTTTCAGATGGTGAGGCAGAGCATCATGCTTCTTCAAGAACCAAGCAAACAAAAGCAGCTACTGAAGCAGTTACCAATGTGACCACTGGAACTGAGCTGAACAGAATTTCAAATCAAATCACAAATGTAACACATGCAACAGAACAAGTTTCCTTGGGAAATAAGAGCTCTACAGCAATTCATAGCACCGGTGAGCCGAAAAGTGATGTTGATGGAAGAACAACATCAGGTCTTGAGGCACCCAGCACAGAAAGTGAGTTTAAAGCCATGGCTGCAGATGCTTCTGTTTTTACATTTGGAGATGAAGAAGACTATGAAAGTGATTGA 1827 0.4269 MESVPSDVSTSPPVKDTGGQASAAVVSGQDSTAYKVPSRVSPTVISSWAKNLKVSQSFSGSQDDSSSGNAGKSAFSRITSNIGLRLSPKSPPAADDSSSETAGQSNLFGSITKGLVDTSKNAVKAVQVKARHVVSQNKRRYQEGGFDLDLTYITENIIAMGFPAGDMSSGFFGYVEGFYRNHMEEVIKFFETHHKDKYKVYNLCSERLYDASLFEGKVASFPFDDHNCPPIQLIISFCQSAYSWLKEDIENVVVVHCKAGMARTGLMISSLLLFLKFFPTAEESMDYYNQKRCIDGKGLVLPSQIRYVKYFERVLTYFNGENPSARRCMLRGFRLHRCPYWIRPSITVSDHRGVLFSTKKHPRTKELLPEDIWFSAPKKGVMVFALPGEPGLTELAGDFKIHFHDRQGDFYCWLNTTMTENRKVLNISDLDGFDKRKLPSPGFLVEVVLVDYNGNVVTYKPDTVTNKSDESSSNNPAPVEASIIALNVDKESGSNDKDDVFSDGEAEHHASSRTKQTKAATEAVTNVTTGTELNRISNQITNVTHATEQVSLGNKSSTAIHSTGEPKSDVDGRTTSGLEAPSTESEFKAMAADASVFTFGDEEDYESD* 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1486 608 MobiDBLite consensus disorder prediction 549 564 - -
Lan4g1486 608 MobiDBLite consensus disorder prediction 1 40 - -
Lan4g1486 608 Gene3D Protein tyrosine phosphatase superfamily 124 321 IPR029021 -
Lan4g1486 608 ProSitePatterns Tyrosine specific protein phosphatases active site. 255 265 IPR016130 GO:0016311|GO:0016791
Lan4g1486 608 CDD PTP_PTEN 149 313 IPR045101 GO:0016791
Lan4g1486 608 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 9 608 - -
Lan4g1486 608 MobiDBLite consensus disorder prediction 491 515 - -
Lan4g1486 608 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 232 292 IPR000387 GO:0016311|GO:0016791
Lan4g1486 608 MobiDBLite consensus disorder prediction 487 522 - -
Lan4g1486 608 ProSiteProfiles Phosphatase tensin-type domain profile. 139 318 IPR029023 -
Lan4g1486 608 ProSiteProfiles C2 tensin-type domain profile. 325 452 IPR014020 -
Lan4g1486 608 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 152 321 IPR029021 -
Lan4g1486 608 MobiDBLite consensus disorder prediction 460 479 - -
Lan4g1486 608 MobiDBLite consensus disorder prediction 549 589 - -
Lan4g1486 608 PANTHER PHOSPHATIDYLINOSITOL 3,4,5-TRISPHOSPHATE 3-PHOSPHATASE AND PROTEIN-TYROSINE-PHOSPHATASE PTEN2A 9 608 - -
Lan4g1486 608 SMART PTEN_C2_2 323 451 IPR014020 -
Lan4g1486 608 MobiDBLite consensus disorder prediction 83 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1486 Lan-Chr4 23976086 23981647 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1486 3 608 Protein tyrosine phosphatase (PTP) family AT3G19420 67.208 0.0 834
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1486 K01110 - gmx:100784003 1026.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0497 8 7228509 7233742 Lan4g1486 4 23976086 23981647 LSH
Lan18g0993 18 14997823 15004085 Lan4g1486 4 23976086 23981647 PCT