Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1459 ATGCATGATAAGGATGCTTTTTCTCCCTCCTCCAATGATGGATACGGCGCCAACGCCGTCGCCAGCAGTCAAATGCAGTCAAACAGCGCCGCCGCCTTTGCTTCCTTTTACTCTGCTTTGCTGGATGAAAATATTCCGCCGTCGATCTCAGCAAGCTGCAGCAATCTCGGCGGCAGCGCTGTCTCGCTTTACCCGTACTCTTCTGATGACTCGGGAACTCAGAGCCATGGCTACGACTCGTGCTTCATCCAGAAACACCAGGACATGGTGAATCGTCACAGCATGTGCCTCACTCGCCTCGTGGAAACTTCTAAAGAGGTCGAAACTCTGAGACAAGAGAACGCGCAGCTCCGTGCTGCGGTCGAGGAGCTGCAGAAGAATCTGAACCTCGTGATCCAGGCCTCGTTGGAGAACCAATTCGGTGGTGAAACGCAAACGACACCGTTTGATGTGGTGCATGGGTTCCGTGGGTTTCACGTTGGGGATGGGAAAGAGAACTGCGCTGATTGGAATATTAATATCAATAATAGTAATCATAATAGTAAGAATGAGAAGGTGGATATTTCGGAGGAGAGTCCAACAAGCGTGATTGAGAATAACGGTGATGAGGTAAAGAGGTTCGCATTGCCGAAAAGCATTTCTGTGAGGTCAAATGATTACTTGAAGACTCAATCTGCTGCGGTCGTTCCTACAAATACCACTGCCATGCGCGCGAAGGGGGCTACTCGCCCACGCGCCTCCACCATCACTGCTTCAGATGCTGTTCAAAAGGTGTATGTGCGTGGAGGGCAGAAAGAGGAAGAACCCCTTGAGATGGTGGTGTACAACCAAGGGATGTTAAAGACTGAGCTGTGTAACAAATGGCAGGAAACTGGGACATGCCCATATGGAGATCACTGCCAATTTGCTCACGGCATTGGGGAGCTTCGACCAGTCATCCGTCATCCACGCTACAAAACTGAGGTATGCAGAATGGTCCTTGCTGGGGTTGTATGCCCATATGGCCATAGATGCCATTTCCGCCATGCACTCACTGAACAAGAGAAAGCTTTATCACAGCCTAATCCCAGAGCATTAATCAAGCTGGATAGATAA 1095 0.5005 MHDKDAFSPSSNDGYGANAVASSQMQSNSAAAFASFYSALLDENIPPSISASCSNLGGSAVSLYPYSSDDSGTQSHGYDSCFIQKHQDMVNRHSMCLTRLVETSKEVETLRQENAQLRAAVEELQKNLNLVIQASLENQFGGETQTTPFDVVHGFRGFHVGDGKENCADWNININNSNHNSKNEKVDISEESPTSVIENNGDEVKRFALPKSISVRSNDYLKTQSAAVVPTNTTAMRAKGATRPRASTITASDAVQKVYVRGGQKEEEPLEMVVYNQGMLKTELCNKWQETGTCPYGDHCQFAHGIGELRPVIRHPRYKTEVCRMVLAGVVCPYGHRCHFRHALTEQEKALSQPNPRALIKLDR* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1459 364 Coils Coil 100 134 - -
Lan4g1459 364 ProSiteProfiles Zinc finger C3H1-type profile. 317 345 IPR000571 GO:0046872
Lan4g1459 364 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 15 51 355 - -
Lan4g1459 364 Gene3D - 274 312 - -
Lan4g1459 364 Gene3D - 313 349 - -
Lan4g1459 364 ProSiteProfiles Zinc finger C3H1-type profile. 279 307 IPR000571 GO:0046872
Lan4g1459 364 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 281 305 IPR000571 GO:0046872
Lan4g1459 364 SMART c3hfinal6 317 344 IPR000571 GO:0046872
Lan4g1459 364 SMART c3hfinal6 279 306 IPR000571 GO:0046872
Lan4g1459 364 SUPERFAMILY CCCH zinc finger 313 347 IPR036855 GO:0046872
Lan4g1459 364 SUPERFAMILY CCCH zinc finger 276 311 IPR036855 GO:0046872
Lan4g1459 364 PANTHER CCCH ZINC FINGER/TIS11-RELATED 51 355 IPR045877 GO:0003729
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1459 Lan-Chr4 23712765 23716070 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1459 82 362 C3H Transcription Factor Family AT1G68200 48.951 2.22e-81 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lan4g1459 zf-CCCH 3.6e-12 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1459 K18753 - gmx:100819250 471.47