Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1439 ATGTCTATAAGCACAAAGAGAGAGTTAGGTTCTAATGAAGAAGAAAGTGAATTGAGAAGAGGGCCTTGGACCCTTGAAGAAGATAGTTTACTTATACACTATATTACTTGTCATGGTGAAGGTCGTTGGAATATGTTAGCCAAAAGTGCAGGATTGAAGAGGAGTGGAAAAAGCTGCAGGCTCAGATGGCTGAATTACTTGAAACCTGACATTAAGAGAGGGAATCTTACTCCACAAGAACAACTCCTGATCCTTGAACTCCACTCCAAGTGGGGTAATAGGTGGTCAAAAATTGCTCAGCATCTACCGGGGAGAACAGACAATGAGATCAAGAACTATTGGAGAACAAGGGTACAAAAACAGGCACGCCAGCTTAACATTGAGTCTGGTAGCAAGAGATTCATTGATGCAGTGAAGTGTTTCTGGATGCCTAGATTGCTTCAAAAGATGGAACAGGACTCATTCCTCAGCTCTTACTCTTCCATGACAAACATGAATTTTGGTAACTCAGCAGAAGCTTCAACAAGTTCAATCTCAACCACTTCCAATATTCCTTATCTTCCTTCACCAACTCCACCACAAGAGCTATTTATTGATGCTGCAAATGCAAATCATTTAAGTAGTATGTCCAACCACACCAATGCTTCCTTAAACTTGGATTCCTTGCAATTTTCACAGCTACTTGAAATTTCAGAACAACCAACATGTCCTCCTAATATGTTTGAGAACAATGTTTATAACAATCCAATCCAGGATAATTGGTATGTTGATACCAACAACTATGGCATGCAAGGTCTGAACATGGAACCCCTTCAAGTAATGGAGAGTTATGATATTCCAGAGTTTGCTTTTCAGGCTGAAGGGAATGATGAGTGGATCTTAGACAACATTGGTGATACTTTATGGAACATGAATGCTATGTAA 924 0.3983 MSISTKRELGSNEEESELRRGPWTLEEDSLLIHYITCHGEGRWNMLAKSAGLKRSGKSCRLRWLNYLKPDIKRGNLTPQEQLLILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARQLNIESGSKRFIDAVKCFWMPRLLQKMEQDSFLSSYSSMTNMNFGNSAEASTSSISTTSNIPYLPSPTPPQELFIDAANANHLSSMSNHTNASLNLDSLQFSQLLEISEQPTCPPNMFENNVYNNPIQDNWYVDTNNYGMQGLNMEPLQVMESYDIPEFAFQAEGNDEWILDNIGDTLWNMNAM* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1439 307 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 67 IPR017930 -
Lan4g1439 307 ProSiteProfiles Myb-like domain profile. 15 67 IPR001005 -
Lan4g1439 307 MobiDBLite consensus disorder prediction 1 20 - -
Lan4g1439 307 Gene3D - 76 118 - -
Lan4g1439 307 Gene3D - 17 73 - -
Lan4g1439 307 SMART sant 19 69 IPR001005 -
Lan4g1439 307 SMART sant 72 120 IPR001005 -
Lan4g1439 307 CDD SANT 77 116 IPR001005 -
Lan4g1439 307 PANTHER TRANSCRIPTION FACTOR MYB21-LIKE 4 306 - -
Lan4g1439 307 SUPERFAMILY Homeodomain-like 18 114 IPR009057 -
Lan4g1439 307 CDD SANT 22 67 IPR001005 -
Lan4g1439 307 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 122 IPR017930 -
Lan4g1439 307 ProSiteProfiles Myb-like domain profile. 68 118 IPR001005 -
Lan4g1439 307 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 4 306 IPR044676 GO:0003700|GO:0006355|GO:0043565
Lan4g1439 307 Pfam Myb-like DNA-binding domain 73 116 IPR001005 -
Lan4g1439 307 Pfam Myb-like DNA-binding domain 20 67 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1439 Lan-Chr4 23531641 23533436 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1439 15 154 MYB Transcription Factor Family AT1G68320 82.857 4.62e-84 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan4g1439 Myb_DNA-binding 3.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1439 K09422 - gmx:100780759 450.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0465 8 6931661 6933247 Lan4g1439 4 23531641 23533436 LSH