Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1431 ATGGCTGAGCATCGTAAACAGCCACCAAAGAGACAGAACCAAAGAGCTAAACAAACCTTTCCAGATCCCAACATGATGAGAAAACTTCGCATCGTTTACAATGATCCTGATGCTACTGACTCATCTGATGATGAACCAGAGCCAAGAAAAATCAAAAGAACCATCCACGAGATACCACTTCCCATTCTTTCTGTGACCAACTCTACCATCACCTTTACTGAAACAACAAGCTCATATGATGAAACAATTAACAAGAGTGTTGGTGTTTTGAACAAAACTTGCATGGAAAGTCAAAAACCCCAAAAAAAGAAGAGGGTTTTTACACAAAACTCTTCAAGTAAGAAACTACCTTGTGGCAAGTATAGAGGAGTTAGGCAAAGAAAATGGGGAAAGTGGGCTGCTGAAATCCGAGACCCGTTTCGGTCTACCCGTCTCTGGTTAGGTACTTACAACACTGCTGAAGAGGCTTCACAAGCCTGTGAGAAGAAAAGGCTTGAATTTGATGCCATGGCAAAGGCTCAATCTTGCAGCAAAGATTGTTATTCTACTGCTTCTTCTGTTGTGTTACCTAAGACTACTACTATTACAACTTCTGATAAGTGTAACAAGCCTGTGTCTTTATTACATAAGTCTTCTAGTTCTACTACTTTGGTGGAATCTGAGAGCATGGTGTCTCACACATCACCGTCTTCTGTGCTTGAATTGGATGCTCTGGCTTCTAATTTGATTGAAAAGAGTAATCTTTCATGCAATGAAGCTATTGACACTTGTGATTTGGTGGCTGAGTTAGCTGAGTTGGAGATACCAGATTTGGGCACTTGGAACTTGCCTCCAACATCTAATGTTGCTGCTTCTGTGTCTGAGCCAAACTTTGAGCTTGATCTTGATTTTGATTTGTTGCCATTTGATGATTTTGTAAAGGGCATTGGTGATCTTGGTGGTCTGGAAGATCTCAATATCTTCGGATTTGATGACGATGGGCCTAGTGAACTTCCCGATTTCGATTTCGGTGATTTTATTGCGGATGAGTTTGCTGGTTGGATTGAGGAACCCCTCAATGTAACTTGCGCCTAA 1074 0.4134 MAEHRKQPPKRQNQRAKQTFPDPNMMRKLRIVYNDPDATDSSDDEPEPRKIKRTIHEIPLPILSVTNSTITFTETTSSYDETINKSVGVLNKTCMESQKPQKKKRVFTQNSSSKKLPCGKYRGVRQRKWGKWAAEIRDPFRSTRLWLGTYNTAEEASQACEKKRLEFDAMAKAQSCSKDCYSTASSVVLPKTTTITTSDKCNKPVSLLHKSSSSTTLVESESMVSHTSPSSVLELDALASNLIEKSNLSCNEAIDTCDLVAELAELEIPDLGTWNLPPTSNVAASVSEPNFELDLDFDLLPFDDFVKGIGDLGGLEDLNIFGFDDDGPSELPDFDFGDFIADEFAGWIEEPLNVTCA* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1431 357 ProSiteProfiles AP2/ERF domain profile. 120 177 IPR001471 GO:0003700|GO:0006355
Lan4g1431 357 SUPERFAMILY DNA-binding domain 120 166 IPR016177 GO:0003677
Lan4g1431 357 PRINTS Ethylene responsive element binding protein signature 121 132 IPR001471 GO:0003700|GO:0006355
Lan4g1431 357 PRINTS Ethylene responsive element binding protein signature 143 159 IPR001471 GO:0003700|GO:0006355
Lan4g1431 357 Pfam AP2 domain 120 168 IPR001471 GO:0003700|GO:0006355
Lan4g1431 357 SMART rav1_2 120 174 IPR001471 GO:0003700|GO:0006355
Lan4g1431 357 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF119 12 357 - -
Lan4g1431 357 MobiDBLite consensus disorder prediction 1 49 - -
Lan4g1431 357 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 12 357 - -
Lan4g1431 357 Gene3D AP2/ERF domain 119 174 IPR036955 GO:0003700|GO:0006355
Lan4g1431 357 CDD AP2 120 159 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1431 Lan-Chr4 23359013 23360939 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1431 26 356 AP2-EREBP Transcription Factor Family AT1G68550 34.593 2.85e-41 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lan4g1431 AP2 2e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1431 - - lang:109336607 464.536
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0455 8 6747992 6750315 Lan4g1431 4 23359013 23360939 LSH
Lan20g0470 20 3414440 3416960 Lan4g1431 4 23359013 23360939 LSH