Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1430 ATGAAGGTTTTTGTCAAGACTTTGAAAGGCACTCACTTCGAAATCGAAGTCAAGCCCGAAGACACGGTTTCTGATGTGAAGAAAAATATAGAAACTGTTCAGGGTGCAGATGTTTATCCTGCTGCACAACAAATGCTTATTCATCAAGGGAAGGTTCTAAAGGATGCTACAACTCTGGAGGAAAATAAAGTAGCTGAAAATAGTTTCATTGTAATTATGCTATCAAAGACTAGGAGTACATCTGGTGAAGGGTCTGCTACTTCAACTGCACCTTCAGTGAAGGCCCCACAAGCAAGTGCAGCTCCTACTTCAACCCCCCCAGTGTCTGTAGCACCTCAGGCTCCTGCTGCAACTGTAGCACCACTTGCACCTGTAACTGCTCCTGCTCCTTCGGCTGCTCCTGCTCCTGCTCCAATACCTTCAAGCACTGCTGTGGAAGGGTCTGATGTCTATGGGCAGGCAGCATCAAATCTGGTTGCTGGAACCAGTTTAGAGGAAATTATTCAGCACATCCTTGATATGGGTGGTGGGAGCTGGGATAGGGATACTGTTGTCCGGGCTCTTCGAGCTGCTTACAACAACCCAGAGAGAGCTGTTGAATATCTGTATTCAGGTATCCCTGAGCAAGCTGAAGCACCCGTTATAGGCCGAGTACCCGCAAGTGCACAACCTGCTATTCCTACAGATCCTGCTGCACAAACTGCACAACCAGCTCCTGTTACCTCAGGCGGGCCTAATGCTCTACCTTTAGACCTCTTTCCCCAGGGCCTCCCCAATGCTGGTTCTGGTGCTGCTGGTGCTGGCTCTTTAGATTTTCTACGCAACAGTCAACAATTCCAAGCCCTGCGTGCTATGGTGCAGGCTAATCCACAAATATTGCAGCCCATGCTACAAGAGCTTGGCAAACAAAATCCTCATCTTATGAGATTGATTCGAGATCATCAAGCTGACTTCCTCCGTCTGATAAATGAACCTGTGGAAGGTGGCGAAGGGAATTTATTAGGGCAACTGGCTTCTGGCATGCCACAAGCAGTAACTGTCACCCCTGAGGAGCGGGAGGCAATTGAACGTCTTGAAGCAATGGGTTTTGATCGTGCAACTGTATTGGAGGTTTACTTCGCTTGTAACAAAAACGAGGAATTGGCTGCCAACTACCTTTTAGATCACATGAATGAGTTTGATGAACAATAG 1191 0.4761 MKVFVKTLKGTHFEIEVKPEDTVSDVKKNIETVQGADVYPAAQQMLIHQGKVLKDATTLEENKVAENSFIVIMLSKTRSTSGEGSATSTAPSVKAPQASAAPTSTPPVSVAPQAPAATVAPLAPVTAPAPSAAPAPAPIPSSTAVEGSDVYGQAASNLVAGTSLEEIIQHILDMGGGSWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEAPVIGRVPASAQPAIPTDPAAQTAQPAPVTSGGPNALPLDLFPQGLPNAGSGAAGAGSLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIRDHQADFLRLINEPVEGGEGNLLGQLASGMPQAVTVTPEEREAIERLEAMGFDRATVLEVYFACNKNEELAANYLLDHMNEFDEQ* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1430 396 Gene3D - 1 80 - -
Lan4g1430 396 SMART CBM 268 311 IPR006636 -
Lan4g1430 396 Gene3D - 343 390 - -
Lan4g1430 396 CDD UBA1_Rad23_plant 158 207 - -
Lan4g1430 396 MobiDBLite consensus disorder prediction 80 112 - -
Lan4g1430 396 SUPERFAMILY UBA-like 332 394 IPR009060 GO:0005515
Lan4g1430 396 PRINTS DNA repair protein Rad23 signature 296 318 IPR004806 GO:0006289
Lan4g1430 396 PRINTS DNA repair protein Rad23 signature 345 361 IPR004806 GO:0006289
Lan4g1430 396 PRINTS DNA repair protein Rad23 signature 362 376 IPR004806 GO:0006289
Lan4g1430 396 PRINTS DNA repair protein Rad23 signature 377 392 IPR004806 GO:0006289
Lan4g1430 396 Pfam XPC-binding domain 270 325 IPR015360 GO:0003684|GO:0006289|GO:0043161
Lan4g1430 396 SMART uba_6 351 388 IPR015940 -
Lan4g1430 396 SMART uba_6 164 204 IPR015940 -
Lan4g1430 396 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 348 389 IPR015940 -
Lan4g1430 396 SUPERFAMILY Ubiquitin-like 1 79 IPR029071 -
Lan4g1430 396 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Lan4g1430 396 MobiDBLite consensus disorder prediction 80 111 - -
Lan4g1430 396 PANTHER UV EXCISION REPAIR PROTEIN RAD23-RELATED 1 395 - -
Lan4g1430 396 Gene3D - 157 207 - -
Lan4g1430 396 SMART ubq_7 1 75 IPR000626 GO:0005515
Lan4g1430 396 Pfam UBA/TS-N domain 351 386 IPR015940 -
Lan4g1430 396 Pfam UBA/TS-N domain 164 202 IPR015940 -
Lan4g1430 396 MobiDBLite consensus disorder prediction 227 241 - -
Lan4g1430 396 SUPERFAMILY XPC-binding domain 267 332 IPR036353 GO:0003684|GO:0006289|GO:0043161
Lan4g1430 396 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 162 205 IPR015940 -
Lan4g1430 396 SUPERFAMILY UBA-like 162 216 IPR009060 GO:0005515
Lan4g1430 396 TIGRFAM rad23: UV excision repair protein Rad23 1 393 IPR004806 GO:0006289
Lan4g1430 396 MobiDBLite consensus disorder prediction 126 145 - -
Lan4g1430 396 MobiDBLite consensus disorder prediction 223 246 - -
Lan4g1430 396 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 395 - -
Lan4g1430 396 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Lan4g1430 396 Gene3D - 260 326 IPR036353 GO:0003684|GO:0006289|GO:0043161
Lan4g1430 396 CDD Ubl_Rad23 1 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1430 Lan-Chr4 23323033 23327423 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1430 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 37.838 8.26e-09 52.0