LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lan4g1419	ATGTCGAGTGTGGGTGTTGGAGTGGGGAGAGAGTTGTCGAATCCTCCATTGGATGGAATATCTAACCTTCGATTCTCAAATCACAGTGATCTCCTTCTTGTATCCTCATGGGATAAGAGTGTTCGATTATATGACGCAACTGCTAATATCCTCAGATCTCAATTCCTTCACTCTGGTCCAGTCCTTGATTGTTGCTTCCATGATGATTCTTCTGGTTTCAGTGCCTCCTCTGATAACACTGTTAGGCGACTCGTTTTCAGCTCTAACAAGGAGGATATTTTGGGAACCCATGATGCTCCTGTTCGTTGCCTCGACTACTCCTATGCTGCAGGCCAATTGGTCACTGGAAGTTGGGACAAAACCATTAAATGTTGGGACCCTAGAGGTGCAAGTGGCCAACACCACACTCTTGTTGGCACATATCCACAACCTGAGCGTGTTTACTCTCTATCGCTTGTTGGCCATCGCCTCGTTGTAGCAACCGCTGGAAGGCATGTTAATGTTTATGATTTGAGGAACATGTCTCAACCTGAGCAACGAAGAGAATCATCATTGAAATATCAAACCAGATGTGTGCGTTGTTACCCAAATGGAACTGGATATGCACTTAGTTCTGTCGAAGGGCGGGTTGCCATGGAGTTCTTTGACCTTTCTGAGCCTAGCCAAGCAAAAAAATATGCTTTCAAGTGTCACAGAAAATCTGAAGCTGGAAGGGACATTGTGTATCCTGTAAATGCTATGGCATTCCACCCCATATATGGTACATTTGCCACTGGAGGTTGTGACGGTTATGTTAATGTTTGGGACGGAAGTAACAAGAAGAGACTGTATCAGTACTCAAAATATCCAAGTAGCATTGCTGCACTTTCATTTAGCAGAGATGGACGCCTCCTTGCTGTTGCATCAAGTTACACATTTGAAGATGGACCAAAACCGCATGAACAAGATGCTATCTATGTTCGTAGTGTAAACGAGATAGAGGTCAAGCCAAAACCCAAAGTCTATGCCAATCCTCCAGCGTGA	1023	0.4457	MSSVGVGVGRELSNPPLDGISNLRFSNHSDLLLVSSWDKSVRLYDATANILRSQFLHSGPVLDCCFHDDSSGFSASSDNTVRRLVFSSNKEDILGTHDAPVRCLDYSYAAGQLVTGSWDKTIKCWDPRGASGQHHTLVGTYPQPERVYSLSLVGHRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEPSQAKKYAFKCHRKSEAGRDIVYPVNAMAFHPIYGTFATGGCDGYVNVWDGSNKKRLYQYSKYPSSIAALSFSRDGRLLAVASSYTFEDGPKPHEQDAIYVRSVNEIEVKPKPKVYANPPA*	341

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lan4g1419	340	PANTHER	MITOTIC CHECKPOINT PROTEIN BUB3.2	7	335	-	-
	Lan4g1419	340	Pfam	WD domain, G-beta repeat	19	45	IPR001680	GO:0005515
	Lan4g1419	340	Pfam	WD domain, G-beta repeat	93	126	IPR001680	GO:0005515
	Lan4g1419	340	Pfam	WD domain, G-beta repeat	228	269	IPR001680	GO:0005515
	Lan4g1419	340	Gene3D	-	10	334	IPR015943	GO:0005515
	Lan4g1419	340	SMART	WD40_4	87	126	IPR001680	GO:0005515
	Lan4g1419	340	SMART	WD40_4	134	170	IPR001680	GO:0005515
	Lan4g1419	340	SMART	WD40_4	47	85	IPR001680	GO:0005515
	Lan4g1419	340	SMART	WD40_4	221	269	IPR001680	GO:0005515
	Lan4g1419	340	SMART	WD40_4	5	45	IPR001680	GO:0005515
	Lan4g1419	340	SMART	WD40_4	272	322	IPR001680	GO:0005515
	Lan4g1419	340	PRINTS	G protein beta WD-40 repeat signature	32	46	IPR020472	-
	Lan4g1419	340	PRINTS	G protein beta WD-40 repeat signature	113	127	IPR020472	-
	Lan4g1419	340	PRINTS	G protein beta WD-40 repeat signature	256	270	IPR020472	-
	Lan4g1419	340	ProSiteProfiles	Trp-Asp (WD) repeats circular profile.	94	126	-	-
	Lan4g1419	340	ProSiteProfiles	Trp-Asp (WD) repeats profile.	94	126	IPR001680	GO:0005515
	Lan4g1419	340	ProSiteProfiles	Trp-Asp (WD) repeats profile.	244	278	IPR001680	GO:0005515
	Lan4g1419	340	SUPERFAMILY	WD40 repeat-like	17	303	IPR036322	GO:0005515
	Lan4g1419	340	PANTHER	MRNA EXPORT FACTOR AND BUB3	7	335	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lan4g1419	Lan-Chr4	23224971	23227615	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lan4g1419	104	309	U-box Gene Family	AT2G33340	25.837	1.45e-07	50.8

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lan4g1419	K02180		-	gmx:100808389	641.343