Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1413 ATGCTGCTTCTTCCTATGAGCTGTATTCTTTTAATGTGCCTCTTCCTCACTTCTTCTTTCCCATTCCCAATCAAAGCTTCCTTCAATCTCTCTTTGCCCCACCAACACTCTCACCCTCAATCTGTTGTTAATGAACTCCAACGGAAAGTGAACATATCTCTTTCCAGAAGAGAACTCCTCTCAAAGGACCAAGCTTGCCTTACCGGAAACCCAATCGACGACTGCTGGCGGTGCGACCCAAATTGGGCCGCAAACCGCCAGCGTCTCGCCGATTGCGGTATCGGGTTCGGCCGAGACGCATTAGGCGGAAAAGGTGGTCAGATCTACACAGTAACAGACTCATCAGACTCAAACCCATCAAACCCAATCCCAGGCACACTCCGTCACGCCGTAATTCAAGACGAACCCTTATGGATCATATTCTCAGCCGACATGACAATCAATCTCAGACACGAACTCATTTTCAACAGCTTCAAAACCATCGACGGCCGTGGCGCCAACGTTCAAATAACCGGCCACGGTTGCATAACACTCCAATACGTCTCAAACATTATCATCCACAACATTCACGTTCACCATTGCAAACCCTCAGGTAACACTAACATACGTTCCAGCCCAACACACGTTGGGTTCCGTGGCATATCAGACGGTGACGGAATATCCATATTCGGTGCTCGTAAGATCTGGATCGACCATTGTTCATTGTCTTATTGTACGGACGGGTTGATAGATGCAATAATGGGTTCAACAGGGATAACAATATCGAATAGTCACTTTGCGCATCATGATGAAGTGATGCTGTTGGGGCATGATGATAAGTATATGCCTGATAAAGGGATGCAGGTAACAATTGCGTTCAACCATTTTGGAGAGGGTTTGGTGCAGAGAATGCCAAGGTGTAGACATGGGTATATACATGTGGTGAATAACGATTTTACGCAGTGGGAGATGTATGCTATCGGAGGTAGTGCAAGTCCAACTATTAACAGCCAGGGTAATCGTTACACCGCTCCTTCCAATCCTGATTCCAAAGAGGTGACGAAGCGCGTGGAGACAAACGAGAACGATTGGAGCGATTGGAATTGGAAAACAGATGGGGACATAATGGTAAATGGAGCATTCTTTGTGCCATCAGGTGCAGGGGCCAGTGCTCAGTACGCAGAAGCAACTAGTCTACAACCTAAATCCGCGGGGCAGATTGACCAACTCACCATGTATTCCGGTGCATTCGGTGATCCAAGGGATAATGGAGATTTATATCCCGGCTTCAACGGAGGTGGGACAGTGACAGGCAGCAGCAAGGGCAAGAATGTCCCGGGTTCCAGCAGCGGCGGCGATGATGGGAACATCTTTGGGATGATATTCGGAGGTGGTAGCAGCCATGCACCACCACCATCACCTTCCTCATTCATTGTATTTGTTTCAACTATTTTGTCTCTTTTAATTATTTTGCTTTTGGACAATACGACCAACCATGTTATTCTATTATCATTACTATGA 1500 0.47 MLLLPMSCILLMCLFLTSSFPFPIKASFNLSLPHQHSHPQSVVNELQRKVNISLSRRELLSKDQACLTGNPIDDCWRCDPNWAANRQRLADCGIGFGRDALGGKGGQIYTVTDSSDSNPSNPIPGTLRHAVIQDEPLWIIFSADMTINLRHELIFNSFKTIDGRGANVQITGHGCITLQYVSNIIIHNIHVHHCKPSGNTNIRSSPTHVGFRGISDGDGISIFGARKIWIDHCSLSYCTDGLIDAIMGSTGITISNSHFAHHDEVMLLGHDDKYMPDKGMQVTIAFNHFGEGLVQRMPRCRHGYIHVVNNDFTQWEMYAIGGSASPTINSQGNRYTAPSNPDSKEVTKRVETNENDWSDWNWKTDGDIMVNGAFFVPSGAGASAQYAEATSLQPKSAGQIDQLTMYSGAFGDPRDNGDLYPGFNGGGTVTGSSKGKNVPGSSSGGDDGNIFGMIFGGGSSHAPPPSPSSFIVFVSTILSLLIILLLDNTTNHVILLSLL* 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1413 499 PANTHER PECTATE LYASE 18-RELATED 6 431 IPR045032 GO:0030570
Lan4g1413 499 PANTHER PECTATE LYASE 6 431 - -
Lan4g1413 499 SMART amb_all 144 341 IPR002022 -
Lan4g1413 499 Gene3D - 69 411 IPR012334 -
Lan4g1413 499 SUPERFAMILY Pectin lyase-like 70 399 IPR011050 -
Lan4g1413 499 PRINTS Pollen allergen Amb family signature 92 109 IPR018082 -
Lan4g1413 499 PRINTS Pollen allergen Amb family signature 116 141 IPR018082 -
Lan4g1413 499 PRINTS Pollen allergen Amb family signature 152 168 IPR018082 -
Lan4g1413 499 PRINTS Pollen allergen Amb family signature 216 237 IPR018082 -
Lan4g1413 499 PRINTS Pollen allergen Amb family signature 296 315 IPR018082 -
Lan4g1413 499 PRINTS Pollen allergen Amb family signature 318 337 IPR018082 -
Lan4g1413 499 PRINTS Pollen allergen Amb family signature 360 384 IPR018082 -
Lan4g1413 499 PRINTS Pollen allergen Amb family signature 389 412 IPR018082 -
Lan4g1413 499 Pfam Pectate lyase 152 333 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1413 Lan-Chr4 23182374 23188119 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1413 2 495 Polysaccharide Lyase AT3G53190 60.558 0.0 566
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1413 K01728 - gmx:100808438 786.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g1413 4 23182374 23188119 Lan4g1413 4 23182374 23188119 ECH
Lan8g0444 8 6646628 6649348 Lan4g1413 4 23182374 23188119 LSH
Lan20g0485 20 3547336 3553941 Lan4g1413 4 23182374 23188119 LSH