Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1409 ATGTTTCACGATTCCACCACCATGCCAACGCGGTGGCCAACTCACCCGAGTCGGTGGACTCACCATCAGGACAAGCTATTCGAGCGAGCTCTGGTGGTGGTGCCGGAGAACACGCCGGACCGATGGGAGAAAATTGCCGAGAAGGTTCAAGGTAAGTCGGCGGCGGAAGTTAAGGAGCACTATGATGATTTGGTTCACGATGTGTTTGAGATTGATTCTGGTCGGGTCGCGGTGCCGGAGTACACGGATGAATCATCGTCGGCGTGGAACTCTTCCAATCAGATATCGTTTATGTCAAAACGTAAATATGGTGACAGCGAGAGGAAGAAAGGAACGCCATGGACAGAAGAGGAACACAGGTTATTTCTTGATGGGCTAAGCAAATTTGGCAAGGGAGACTGGAGAAGCATTTCAAGAAATGTTGTCGTGACAAGAACTCCCACTCAAGTTGCTAGTCATGCCCAGAAATACTTCCTCCGTCAAAAATCAATAAAGAAGGAGAGAAAAAGATCAAGTATCCATGACATAACCACAGTGGATAGTAACTCTGTGTCTGTGCCGATGGATCAGAATAGGGTTCCTCCTCCGGGTCGTCCAATGCAGCATTCACAAGAAATGCAGTTTAACCCAATAAACAATTTGCATGATCAAATGGGTGGGTTTGGGTATTCCAACTATGACTTTTGA 687 0.4731 MFHDSTTMPTRWPTHPSRWTHHQDKLFERALVVVPENTPDRWEKIAEKVQGKSAAEVKEHYDDLVHDVFEIDSGRVAVPEYTDESSSAWNSSNQISFMSKRKYGDSERKKGTPWTEEEHRLFLDGLSKFGKGDWRSISRNVVVTRTPTQVASHAQKYFLRQKSIKKERKRSSIHDITTVDSNSVSVPMDQNRVPPPGRPMQHSQEMQFNPINNLHDQMGGFGYSNYDF* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1409 228 SMART sant 110 160 IPR001005 -
Lan4g1409 228 SMART sant 15 67 IPR001005 -
Lan4g1409 228 PANTHER SYRINGOLIDE-INDUCED PROTEIN 1-3-1B 14 228 - -
Lan4g1409 228 ProSiteProfiles Myb-like domain profile. 17 65 IPR001005 -
Lan4g1409 228 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 109 161 IPR006447 GO:0003677
Lan4g1409 228 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 14 228 IPR043363 -
Lan4g1409 228 ProSiteProfiles SANT domain profile. 109 162 IPR017884 -
Lan4g1409 228 SUPERFAMILY Homeodomain-like 108 163 IPR009057 -
Lan4g1409 228 Gene3D - 14 78 - -
Lan4g1409 228 ProSiteProfiles Myb-like domain profile. 106 158 IPR001005 -
Lan4g1409 228 Gene3D - 112 165 - -
Lan4g1409 228 SUPERFAMILY Homeodomain-like 17 73 IPR009057 -
Lan4g1409 228 Pfam Myb-like DNA-binding domain 17 62 IPR001005 -
Lan4g1409 228 Pfam Myb-like DNA-binding domain 113 158 IPR001005 -
Lan4g1409 228 CDD SANT 113 158 IPR001005 -
Lan4g1409 228 CDD SANT 18 61 IPR001005 -
Lan4g1409 228 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 106 162 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1409 Lan-Chr4 23126450 23129035 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan4g1409 Myb_DNA-binding 1.7e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1409 - - gmx:547481 329.331
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0439 8 6570064 6572356 Lan4g1409 4 23126450 23129035 LSH
Lan20g0487 20 3591988 3594010 Lan4g1409 4 23126450 23129035 LSH