Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1402 ATGAGTAGCATGCCAAGTGGGGGTGATTCTCGAAAGATGTCCAAGGGCCGCCGATCATCATTATCAGTTGAAGAAGCGAGTGAAGGTCTTTTAATGAAAGGCCCATGGACAGCAGCAGAGGATGCAATTTTGGAAGAATATGTCAGAAAACATGGAGAGGGAAACTGGAATGCAGTGCAGAAGCATTCAGGACTTGCTCGTTGTGGGAAAAGCTGCCGTCTACGATGGGCAAATCATTTGAGACCTGATTTGAGAAAGGGTGCATTTTCTGCAGAGGAAGAGGATCGAATCATTGAGCTCCATGCTAGAATGGGAAACAAGTGGGCTCGAATGGCTGCTGAGTTGCCAGGACGTACAGACAATGAGATAAAGAACTATTGGAACACAAGAATTAAGAGAAGGCTACGTTCTGGCTTACCAATCTATCCTGCTGACATATGCCTACGGGTGTTGAACAACAATCAAGAAAGTCTAGATGTCGGCACCTTAAAAAATGAATCTGGCCAGCATGATGATGCCTCACAGACAGACAATTTTGATATACCAGAGCTTGAATTCCAAAATTACGAAATTCACCGGGGTCTACCTTATGCGCCAGCAATTTTTGATATACCTGAAAACTTGTTCCAACAATCTTCAGACTCTTCTCATAGTTATAATGCCATGTCCTCAACGCATCCCAGAAAGCGCCTTCGAGAGTCAGATGAGTTATACAATAATAGTTTTGATGGTTACATCAGTAGTACTGTCCCATTATTTGATCAGTATGGCAATTACACTAGCAAGATAGTTTCTGACCATCCTAGGTTTTCTTCTCCATATGATCTCCTTCTTGACACTGGTCAGTTCCATGGTTATAACTTTCCTGGCAGCCATGCCGCTCTAAATGGCAACACTTCTTCTTCTATGCCCATAACCGAGGCCATGAAGTTGGAGCTCCCTTCACTCCAATATTTAGAAGACCAACAAGGTAGCTGGGGCATGCCCGCATCCCCACTTCCTTCACTTGAGTCTGTTGATACATTTATTCAGTCTCCTCCAACTGATCCTTCTTGGACAGATCCTCTTTCTCCACGGAGCAGTGGTTTGTTGGAAGCAATAATCTGGGAATCCAAAAAAAACTTGAGAGACTCAAATAATAATTCATTGACACAGACACCCGAAAATTGTGTCTCCAATGAAGCATTCAAGAATTTGACCTTGAATCCCCGTATGACAGAATGTGATGAACAATGGGAGCTAAATTCCCCTTTAGGTCAGTCTGCTGCTTCGGTTCTGACCGACTATACACCTATTAACTTGTGCTCAATGGATGGACCGCAATCAATTGAAACCACTCAGAATCATGATACTAACCACAGATCAGTCCCACAGTTTCCACCAGCTTACTCTTCCAGGAATAATAAAAGGTTGAGAAAGATAGACCTTACAAGACCTGATGCTTTATTTGAGTTTGGTTTGTTTGAGAATAGCACTGAGTATAGCAAGGATCAAAATGTTCTAAGAAATGCTTTAGATGCCCTTCTAGGTGATGATTTCCAAGGTTAA 1548 0.427 MSSMPSGGDSRKMSKGRRSSLSVEEASEGLLMKGPWTAAEDAILEEYVRKHGEGNWNAVQKHSGLARCGKSCRLRWANHLRPDLRKGAFSAEEEDRIIELHARMGNKWARMAAELPGRTDNEIKNYWNTRIKRRLRSGLPIYPADICLRVLNNNQESLDVGTLKNESGQHDDASQTDNFDIPELEFQNYEIHRGLPYAPAIFDIPENLFQQSSDSSHSYNAMSSTHPRKRLRESDELYNNSFDGYISSTVPLFDQYGNYTSKIVSDHPRFSSPYDLLLDTGQFHGYNFPGSHAALNGNTSSSMPITEAMKLELPSLQYLEDQQGSWGMPASPLPSLESVDTFIQSPPTDPSWTDPLSPRSSGLLEAIIWESKKNLRDSNNNSLTQTPENCVSNEAFKNLTLNPRMTECDEQWELNSPLGQSAASVLTDYTPINLCSMDGPQSIETTQNHDTNHRSVPQFPPAYSSRNNKRLRKIDLTRPDALFEFGLFENSTEYSKDQNVLRNALDALLGDDFQG* 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1402 515 ProSiteProfiles Myb-like domain profile. 33 80 IPR001005 -
Lan4g1402 515 Pfam Myb-like DNA-binding domain 33 80 IPR001005 -
Lan4g1402 515 Pfam Myb-like DNA-binding domain 86 129 IPR001005 -
Lan4g1402 515 SMART sant 32 82 IPR001005 -
Lan4g1402 515 SMART sant 85 133 IPR001005 -
Lan4g1402 515 CDD SANT 35 80 IPR001005 -
Lan4g1402 515 MobiDBLite consensus disorder prediction 446 465 - -
Lan4g1402 515 CDD SANT 88 129 IPR001005 -
Lan4g1402 515 Gene3D - 88 135 - -
Lan4g1402 515 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 33 80 IPR017930 -
Lan4g1402 515 ProSiteProfiles Myb-like domain profile. 81 131 IPR001005 -
Lan4g1402 515 SUPERFAMILY Homeodomain-like 32 127 IPR009057 -
Lan4g1402 515 MobiDBLite consensus disorder prediction 1 26 - -
Lan4g1402 515 Gene3D - 32 85 - -
Lan4g1402 515 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 26 513 - -
Lan4g1402 515 PANTHER TRANSCRIPTION FACTOR, PUTATIVE-RELATED 26 513 - -
Lan4g1402 515 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 81 135 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1402 Lan-Chr4 23082174 23088113 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1402 31 513 MYB Transcription Factor Family AT5G06100 38.755 5.73e-87 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan4g1402 Myb_DNA-binding 1.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1402 K09422 - gmx:100800658 637.106