Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1390 ATGCCAAACTTTCTCCTTATCCTTCTACCCTTATTTGCTACCCTAGCTTTAGGGGACACCCCTCCCACTACTACTGTCTCTCCTGGAACCATATGCAAATCCACCCCAGACCCATCTTATTGCAAATCTGTGTTGCCTACCCAAAATGGCAGTGTCTATGACTATGGTCGTATCTCAGTTAAAAAATCAATATCCGAAGCCACCAAATTCTTGAACTTAGTTAACATATATCTCCAGAAAAGTTCAACTATTTCCACTCCTGAAATTCGTGCACTCCAAGATTGTAAATCCCTTGCTGAACTTAACCTTGATTTTCTGTCAAGTTCCTTCCAAACAGTTAACAAAACAAGTAGCTTTCTTCAAAGTTCACAAGCCGATGATATTCAAACCTTGCTTAGCGCCATTCTTACAAACCAGCAAACATGCTTTGATGGTCTTCAATCAACAAGCCTGAAAAATGGATTCTCTAGTTCAATTTCTAATGACACAAAACTCTTTAGTGTCTCTCTTGCTCTTTTCACAAAAGGGTGGGTTCCTAGCCACAAAAACAGACCTTCTACTTTTCATCCAACAAAGAAACATCTTGGATTTCAAAATGGTCGTTTACCACTTAAGATGTCAAGTAGAACTCGTGCTATATACGAGTCAGTGAGTAATAGAAAGCTTCTTCAGGTTACAGTGAACAACAATGTTATGGTGAGAGACATTGTGGTAGTTAGTCAAGATGGGAGTGGTAACTTCACCACAATCAATGATGCTATAGCTGCTGCTCCGAACAAATCTTCATCTACAGATGGGTACTTCTTGATATATGTAACTGCTGGTGTTTATGATGAAAATGTGGCCATTGATAAGAAGAAAACGTATTTGATGATGGTTGGAGATGGCATCAACCAGACAATTATTACAGGGAATCGTAGTGTTGTTGATGGATGGACAACTTTCAACTCAGCATCTTTAGCTGTGGTTGGGCAAGGATTCGTGGGTGTGAACTTCACCGTTCGTAACACTGCCGGTGCAGTAAAACACCAAGCAGTAGCACTTCGAAATGGAGCAGATTTGTCAACATTTTACTCCTGCAGCTTTGAAGGCTACCAAGACACTCTATACACTCATTCCTTACGACAATTCTTCAGAGAATGTGACATTTACGGCACTGTAGACTTCATATTTGGAAACGCTGCAGTTGTATTCCAAAATTGCAACTTGTACCCTCGTCTTCCCATGTCTGGACAATTCAATGCTATCACTGCACAAGGCCGAACCGATCCGAACCAGAACACGGGCACTTCTATACACAACTGTACTATTAAAGCGTCTGATGATTTAGCTGCCAACATTGGTGCAGCTAAAACATATCTTGGAAGGCCTTGGAAAGAGTACTCTAGGACGGTTTATATGCAGAGTTTCATAGATAGTGTTGTTGATGTTACTGGATGGAATAAATGGGATGGTGATTTTGCTTTGAGTACGTTGTATTATGCTGAGTTTAACAATAGTGGACCAGGGTCTAGCACTGATAAGAGAGTTACATGGCCGGGTTATCATGTGATTAATGCCACTGATGCTGCTAATTTTACAGTCACTAATTTCTTGCTTGGAGATAATTGGCTACCACAAACGGGAGTAACTTACACCAGTGACTTATTATAA 1653 0.4053 MPNFLLILLPLFATLALGDTPPTTTVSPGTICKSTPDPSYCKSVLPTQNGSVYDYGRISVKKSISEATKFLNLVNIYLQKSSTISTPEIRALQDCKSLAELNLDFLSSSFQTVNKTSSFLQSSQADDIQTLLSAILTNQQTCFDGLQSTSLKNGFSSSISNDTKLFSVSLALFTKGWVPSHKNRPSTFHPTKKHLGFQNGRLPLKMSSRTRAIYESVSNRKLLQVTVNNNVMVRDIVVVSQDGSGNFTTINDAIAAAPNKSSSTDGYFLIYVTAGVYDENVAIDKKKTYLMMVGDGINQTIITGNRSVVDGWTTFNSASLAVVGQGFVGVNFTVRNTAGAVKHQAVALRNGADLSTFYSCSFEGYQDTLYTHSLRQFFRECDIYGTVDFIFGNAAVVFQNCNLYPRLPMSGQFNAITAQGRTDPNQNTGTSIHNCTIKASDDLAANIGAAKTYLGRPWKEYSRTVYMQSFIDSVVDVTGWNKWDGDFALSTLYYAEFNNSGPGSSTDKRVTWPGYHVINATDAANFTVTNFLLGDNWLPQTGVTYTSDLL* 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1390 550 ProSitePatterns Pectinesterase signature 2. 383 392 IPR033131 -
Lan4g1390 550 PANTHER PECTINESTERASE 24 548 - -
Lan4g1390 550 CDD PMEI-like_3 30 177 - -
Lan4g1390 550 Gene3D - 231 549 IPR012334 -
Lan4g1390 550 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 7-RELATED 24 548 - -
Lan4g1390 550 Gene3D Invertase/pectin methylesterase inhibitor family protein 29 175 IPR035513 -
Lan4g1390 550 Pfam Pectinesterase 237 535 IPR000070 GO:0030599|GO:0042545
Lan4g1390 550 Pfam Plant invertase/pectin methylesterase inhibitor 30 172 IPR006501 GO:0004857
Lan4g1390 550 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 30 175 IPR035513 -
Lan4g1390 550 SMART PMEI_2 23 172 IPR006501 GO:0004857
Lan4g1390 550 TIGRFAM PME_inhib: pectinesterase inhibitor domain 5 174 IPR006501 GO:0004857
Lan4g1390 550 SUPERFAMILY Pectin lyase-like 234 547 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1390 Lan-Chr4 22985508 22988568 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1390 4 550 Carbohydrate Esterase AT4G02330 62.191 0.0 710
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1390 K01051 - gmx:100800971 885.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g1390 4 22985508 22988568 Lan4g1390 4 22985508 22988568 ECH