Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1389 ATGAAGAATCTCATGAAAGTAGCACCCTTTCTAGCTCTTGTTTTTGTGCTAGTCTTTTCAGGAACTCATTTCACTAACACCATAAAAGAATCAAGTCCTTCACAAAAACACCACATACATTTCCAAAAGCACATTCAAGTAGCCAAATCAACATGCCAAGGAACACTCTACCCAGACCTATGTGTCTCAACCCTTGCCACTTTACCAAACCTTGCTTCAAAATCTGTCCCACAAATTATCTCATCTGTTATCAACCAAACAATATACGATGTCAAATCATCATCCTACAACTGCACCAGCCTAAGAAAGAAACTCAAAAATCTAAAACCAGTTGAACAAAGAGCCCTAGATGACTGTCTAAAACTGTTTGATAAAACAACTGTGGAGCTCAAAACAACCATGGCTGAACTCTCAAAAACCACAATGGTTTCGAAGAGTTACCATGACTTGCAAACTCTGCTAAGTGGAGCAATGACCAACTTGTACACATGCCTAGATGGGTTTGTTTACACCAAAGGAGGGAACAATCATGTGAGAAAAAAAATTGAGAAGAAGATACATAAGATATCACACCATGTTAGTAACTCTTTAGCCATGTTGAAGAAAGTTCCTGGAGTGAAGAAAAAATCTAGGTCTAATGAAGTGTTCCCTGAATATGGTAAGATGAAAAAAGGGTTCCCTTCTTGGGTAAACTCAAAAGGCCGAAAGCTCCTAAAAGCTTCTGTGAATGATATCAAGTTTGATGTTGTTGTGGCCAAAGATGGAAGTGGCAATTTCACCACTATAAGGGAAGCATTGGATGTAACTCCTAATTACAGCACAACTAGGTTTGTGATACACATAAAGGCTGGAGCATACTTTGAGAATGTGGAAGTGGTGTGGGAGCAGACCAATCTGATGTTTGTAGGAGATGGAATTGGAAAGACAGTAGTGAAGGGCAATAGAAATGCTGTGGATGGGTGGACCACTTACCAATCAGCTACATTTGCTGTGGTAGGAGATAGATTCATAGCAAAGGGTATAACCTTTGAGAACTCAGCTGGGCCAAGCAAACACCAAGCAGTGGCATTGAGGAATGGTGCTGATCTCTCAGCCTTCTTCAAATGCAGCTTTGTTGGCTACCAAGACACTCTCTATGTCCATTCCCTACGCCAATTCTATCGCGAATGCGACATTTATGGCACGGTGGATTTCATATTTGGCAATGCAGCCGTAGTCTTTCAAAATTGCAACTTATATGCACGCAAGCCAAATGAAAATCAAAAGAACTTGTTCACTGCACAAGGTAGAGAAGACCCTAACCAAAACACTGGCATGACCATTTTGAATTGCAAGATTGCAGCTGCTGAAGATTTAATTCCTGTTAAATCATCCTACAAGAATTACCTAGGCCGTCCTTGGAAATTGTATTCAAGAACGGTTTTTCTAATGTCTTACATTGAGGATTTGATTGACCCAGCAGGGTGGTTGAAATGGAATGAAACATTTGCATTGGATACATTGTACTATGGAGAGTATTTGAATAAGGGTCCGGGTTCAAACACAAGTGGTAGAGTAAAATGGCCCGGTTATAGAGTCATCAATAACTCCATTGAAGCAAGCCAATTCAGTGTGGGGCAGTTTATACAAGGTAATAACTGGTTGAACTCTACTGGGATTCCATTCTTTGCTAATTTGAATTGA 1683 0.4017 MKNLMKVAPFLALVFVLVFSGTHFTNTIKESSPSQKHHIHFQKHIQVAKSTCQGTLYPDLCVSTLATLPNLASKSVPQIISSVINQTIYDVKSSSYNCTSLRKKLKNLKPVEQRALDDCLKLFDKTTVELKTTMAELSKTTMVSKSYHDLQTLLSGAMTNLYTCLDGFVYTKGGNNHVRKKIEKKIHKISHHVSNSLAMLKKVPGVKKKSRSNEVFPEYGKMKKGFPSWVNSKGRKLLKASVNDIKFDVVVAKDGSGNFTTIREALDVTPNYSTTRFVIHIKAGAYFENVEVVWEQTNLMFVGDGIGKTVVKGNRNAVDGWTTYQSATFAVVGDRFIAKGITFENSAGPSKHQAVALRNGADLSAFFKCSFVGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAAVVFQNCNLYARKPNENQKNLFTAQGREDPNQNTGMTILNCKIAAAEDLIPVKSSYKNYLGRPWKLYSRTVFLMSYIEDLIDPAGWLKWNETFALDTLYYGEYLNKGPGSNTSGRVKWPGYRVINNSIEASQFSVGQFIQGNNWLNSTGIPFFANLN* 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1389 560 PANTHER PECTINESTERASE 13 559 - -
Lan4g1389 560 PANTHER PECTINESTERASE 13 559 - -
Lan4g1389 560 TIGRFAM PME_inhib: pectinesterase inhibitor domain 31 202 IPR006501 GO:0004857
Lan4g1389 560 Pfam Pectinesterase 248 545 IPR000070 GO:0030599|GO:0042545
Lan4g1389 560 Gene3D Invertase/pectin methylesterase inhibitor family protein 46 205 IPR035513 -
Lan4g1389 560 SMART PMEI_2 43 199 IPR006501 GO:0004857
Lan4g1389 560 CDD PMEI-like_3 50 205 - -
Lan4g1389 560 SUPERFAMILY Pectin lyase-like 246 557 IPR011050 -
Lan4g1389 560 Pfam Plant invertase/pectin methylesterase inhibitor 49 199 IPR006501 GO:0004857
Lan4g1389 560 ProSitePatterns Pectinesterase signature 2. 392 401 IPR033131 -
Lan4g1389 560 Gene3D - 242 559 IPR012334 -
Lan4g1389 560 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 49 203 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1389 Lan-Chr4 22970751 22975825 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1389 72 559 Carbohydrate Esterase AT4G02320 53.213 0.0 548
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1389 K01051 - gmx:100802881 868.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan20g0513 20 3789346 3794149 Lan4g1389 4 22970751 22975825 LSH
Lan4g0988 4 13672729 13674641 Lan4g1389 4 22970751 22975825 PCT
Lan16g0925 16 16234498 16236774 Lan4g1389 4 22970751 22975825 PCT
Lan4g1389 4 22970751 22975825 Lan16g0926 16 16269974 16275744 PCT