Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1387 ATGTGTGGTGGTGCTATAATCGCTGACTTCATCCCTCGCCGTGGAAACCGCCGCCTCACCGCCTCGGAGATCTGGCCTAACTCATTCGGTAAACAGCAGAATGATTTCGACTTAGATTCCTCTTACCAACAATCCACCATTGTGAAGACATCATCCCAACCTTCCTTGGAAACAGCTACTAAGCAAGTTGAGAAGCCTGTGAAGAGGCAGAGGAAAAATCTCTACAGAGGAATTCGGCAGCGTCCGTGGGGAAAATGGGCAGCTGAGATTCGTGATCCAGGAAAAGGAGTTCGTGTTTGGCTTGGAACATTCAATACTGCTGAAGAAGCTGCTAGAGCCTATGATAGAGAAGCTCGAAAAATCCGAGGCAAAAAAGCCAAGGTCAATTTCCCTAATGAAGATGATGAGTATTCAATTCAAGCTCGAAATAATCGTCCACCTCTCCCACCACAAAAAAATCCATCGAATCAGCAACCATACCGTTGTGGTAATTTGAATAATGCCCCAATTATTAAAAATCTGCACTTGGAGTTTGGTTATGACCTGAACCAAGCTGGGGCAATTTCTTCTCATCTTGTGACTGACCCAGTTATTATTTCGAGTGATGAAAAATGTGGGTCTGGTTCAGAAGGTGCTTACTCCACAACGGTGAATGGGAATGGTTGTTTCAGTGGAGAGATGAATGTGAATGTGAATGTGAAAGAGGTTTCAGAAGTGAAAGAGGTAATGAATGAAGGGCAAGAAGTAAAGAATGATGTGCTGAAGCTTACAGAGGAGTTAATGGCTTATGAGAATTACATGAAGTTTTTTCAGATTCCTTACTATGATGGCCAATCAACTGAGTCAAATAATGTTCAGGAAAGTTTGGTTGGGGATCTTTGGAGTTTTGATGAATAA 897 0.4281 MCGGAIIADFIPRRGNRRLTASEIWPNSFGKQQNDFDLDSSYQQSTIVKTSSQPSLETATKQVEKPVKRQRKNLYRGIRQRPWGKWAAEIRDPGKGVRVWLGTFNTAEEAARAYDREARKIRGKKAKVNFPNEDDEYSIQARNNRPPLPPQKNPSNQQPYRCGNLNNAPIIKNLHLEFGYDLNQAGAISSHLVTDPVIISSDEKCGSGSEGAYSTTVNGNGCFSGEMNVNVNVKEVSEVKEVMNEGQEVKNDVLKLTEELMAYENYMKFFQIPYYDGQSTESNNVQESLVGDLWSFDE* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1387 298 Gene3D AP2/ERF domain 74 132 IPR036955 GO:0003700|GO:0006355
Lan4g1387 298 PANTHER DNA-BINDING DOMAIN 30 277 IPR044808 GO:0003700|GO:0009873
Lan4g1387 298 SMART rav1_2 74 137 IPR001471 GO:0003700|GO:0006355
Lan4g1387 298 PRINTS Ethylene responsive element binding protein signature 75 86 IPR001471 GO:0003700|GO:0006355
Lan4g1387 298 PRINTS Ethylene responsive element binding protein signature 97 113 IPR001471 GO:0003700|GO:0006355
Lan4g1387 298 ProSiteProfiles AP2/ERF domain profile. 74 131 IPR001471 GO:0003700|GO:0006355
Lan4g1387 298 Coils Coil 239 259 - -
Lan4g1387 298 SUPERFAMILY DNA-binding domain 74 132 IPR016177 GO:0003677
Lan4g1387 298 MobiDBLite consensus disorder prediction 125 158 - -
Lan4g1387 298 CDD AP2 75 132 IPR001471 GO:0003700|GO:0006355
Lan4g1387 298 PANTHER EREBP TRANSCRIPTION FACTOR 30 277 - -
Lan4g1387 298 Pfam AP2 domain 75 123 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1387 Lan-Chr4 22948342 22950439 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1387 1 132 AP2-EREBP Transcription Factor Family AT3G16770 56.522 5.48e-42 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lan4g1387 AP2 7.7e-13 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g1387 4 22948342 22950439 Lan4g1387 4 22948342 22950439 ECH
Lan8g0422 8 6432179 6433569 Lan4g1387 4 22948342 22950439 LSH