Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1372 ATGGCCCTGCGACCTTCATCTTTCGTGATTCTGCAGGCATATGCTGCACTAGTAGTTCTTTTCTCATTGACGCTATGTTGGTTTGTCATGGTCACACGCATAAAATATGTGAATTTGACAAATGAAAATGTTGTTAATGACATTATTGGCCATCAAAACATAAGCTATCATATGGATACCAAAGATGGAAACCTTCTAGCACAAGGGATTAAGGTGGTTTCTAATGACACGATTTCTATTCAATCACTGAATCCAAATGGAAATCTGATAAACAATGATAGTAGTAGTGTCTCATGCAAGGGTGAAGCATGTTCTTCTAGTTTTAAAATTCGGGATATTGTGGGAAGAGACACGGAGTATGTTGTAGCTGTAACTCAAAATGGACCAGGCAGCATTTATCTCAATCATTTTAAGGAAAAGGGTTTTACACTATTGATTGCAATGATGGTCACAATATTTATTGCTATGTTAAGTTTCCTATACCTAAATGTTAGAGCCACAAGGAGAGAAATGCAATTATGTGCCTCACTTATAAAACAGATTGAAGCTACCAAACAAGCTGAAAGAAAGAATATGAATAAGAGTCTTGCTTTTGCTAGTGCCAGCCATGATGTTCGAACTTCTCTAGCAGGCCTTACAGGTTTGATAGAGATGTCATATGAGTTAGTTACCCCACATTCAGAATTGGAAGCCAATTTAAAACAAATGAACAATTGTATCCGAGATTTACTAGGACTGTTGAATTCTATACTTGACACAAGCAAAATTGAGGCAGGGAAAATGCATCTTGAGGAAGAAGATTTTGATCTTTCCCATCTACTGGAAGATGTAGTTGATTTATACCATCCACTGGGTATGAAGAAAGGTGTAGACATTGTATTGGACCCTTGTAATGGTTCTCTTATGAGATATTCACATGTGAAAGGTGATAGAGGAAAACTTAAACAGGTTTTGTGCAATTTATTAAGCAATGCTGTTAAATTTACTGATGAGGGGCACATAGCAGTTAGAGCATGGGTTAGGAAATCAAACATGCAGAACTCAATAATGGATACTAACAACTATAGCTTTATTAAACATGTTTCAAGTTTACTTTGTAAGAAAAACAAAGCACATTGTGACATAGAAGCAGCCATGAGTTCACTCCAACAAGAGAATTCAATAGATGTTACATTTGAAGTGGATGATACAGGAAAAGGAATTCCTAAAGAAAAGTACAAGTCTGTGTTTGAGAATTATGTCCAAGTCAAAGAAACTTCTCTTGGCCAAGGAGGAACTGGCTTGGGACTTGGGATTGTGCAGTCCTTGGTGCGTTTGATGCATGGAGACATTAGAATTGTGGACAAAGATGTAGGGGGAAAAGGAACTTGTTTCAGGTTCAATGTGGTCCTCACTGTATGTGGGACAATGAGGAATGGTAGCAGAAGGGAAAGTACTGAGTATGGATTAGGTGACAGAAACAATGCTCAAGGACTAAACATTGGAAGTAATAGTTCCGGTTCAAGCATTCGTAATTCCTTGGGTCCTGGTTTACGTATTTGCAGCTATCCTAGGCCACAGGCTTCCCATGTTGTTCTTTTGATAGTCGACAAAGAGCGGAAAAGGATTTCGCAAAGATTCATGGAGAGCTTAGGGATTAAAGTTAAGGTTGTGAATCAGTGGGAAAATTTGCTTGAAACTCTTGATAAGATTAAATATAAGGGTGACTATTCCTGCAACCAAAGTTCATCAGTGCCTTCAGATTTGAGTTTTAGGTCCACATCTCATACTCTTTTTCCAAGATCCATAGGAATTCATTTGACTTCAGTGAGTAGAACTGAGTCAATGCCTTCAGTTTTCAAGAAGACAGATATTATAGGAACTGCCCCATGTTTCATTCTGATTATCATTGATACAAATGCAGGACCATTTTCTGAACTTTGCAGCATGGTATCTAGCTTCAGAGAAGGCCTTCTTAACCCAAGTAAAGTTGTTTGGTTAAATAAGCCACTTTTGCATGGTAACAACTTTAAGACCCTTGACAAGGATTTACTTGATCCAAATGATATTGTTCTATCAAAACCTTTTCATGGTAGTCGTTTGACCCAAATTTTAGAGCTTCTTCCTGAGTATGGTGGTGCTTTGAAAAACGGTTTTAGTAGATCAAAAAGAGAAAACGCAATTGATCATACAGTTGGAAAGACTTGTACAGAGTCAAGCTTATCAAAACACAACTCCCTTTTGCATGATAAATCACAAGTGGAACTAAATACTAATGGAAGTTCATTTCAATGTACTGAACAAATTATGAAGGGAACTCAAGAAGAATCACTAGTTCATCAAGGAGAATCACTAGTTCATCAAGGAGAATCACTTGTTCATCAAGGAGAATCACTTGTTCATCAAGGAGAATCACCAGTTCATCAAGGAGAAACAGAAGAATGTGAAGGGTCAAGCCATAACAAACCCTTGAGTGGTAAGAAAGTTTTGGTTGTTGAGGACAATGCCTTGTTACGCAAGCTAGCTTTGGCTACTTTGGTTCCACTTGGTGCAACTATTGAGCAATGTGAGAATGGTGAAGAAGCTGTGAATTTAGTTAAGGAAGGTCTTTCTAGGAAGGATTTTCCTAATCTTCCTTATGATTACATCTTAATGGATTGTGAGATGCCAGTAATGAATGGGTTTGAGGCAACAAGACAAATAAGGGAGATGGAGAAGCCCTATGGTATTCGGATTCCTATCATTGCATTAACTGCTCATACGGATAACATAGTCACAGAGGATGCAATGGACTTTCATTTAGTGAAGCCCATTAAACGAGAACGTGTACTTGAAGCCATCAGACATGTACACGCTAGAAATTGA 2844 0.3797 MALRPSSFVILQAYAALVVLFSLTLCWFVMVTRIKYVNLTNENVVNDIIGHQNISYHMDTKDGNLLAQGIKVVSNDTISIQSLNPNGNLINNDSSSVSCKGEACSSSFKIRDIVGRDTEYVVAVTQNGPGSIYLNHFKEKGFTLLIAMMVTIFIAMLSFLYLNVRATRREMQLCASLIKQIEATKQAERKNMNKSLAFASASHDVRTSLAGLTGLIEMSYELVTPHSELEANLKQMNNCIRDLLGLLNSILDTSKIEAGKMHLEEEDFDLSHLLEDVVDLYHPLGMKKGVDIVLDPCNGSLMRYSHVKGDRGKLKQVLCNLLSNAVKFTDEGHIAVRAWVRKSNMQNSIMDTNNYSFIKHVSSLLCKKNKAHCDIEAAMSSLQQENSIDVTFEVDDTGKGIPKEKYKSVFENYVQVKETSLGQGGTGLGLGIVQSLVRLMHGDIRIVDKDVGGKGTCFRFNVVLTVCGTMRNGSRRESTEYGLGDRNNAQGLNIGSNSSGSSIRNSLGPGLRICSYPRPQASHVVLLIVDKERKRISQRFMESLGIKVKVVNQWENLLETLDKIKYKGDYSCNQSSSVPSDLSFRSTSHTLFPRSIGIHLTSVSRTESMPSVFKKTDIIGTAPCFILIIIDTNAGPFSELCSMVSSFREGLLNPSKVVWLNKPLLHGNNFKTLDKDLLDPNDIVLSKPFHGSRLTQILELLPEYGGALKNGFSRSKRENAIDHTVGKTCTESSLSKHNSLLHDKSQVELNTNGSSFQCTEQIMKGTQEESLVHQGESLVHQGESLVHQGESLVHQGESPVHQGETEECEGSSHNKPLSGKKVLVVEDNALLRKLALATLVPLGATIEQCENGEEAVNLVKEGLSRKDFPNLPYDYILMDCEMPVMNGFEATRQIREMEKPYGIRIPIIALTAHTDNIVTEDAMDFHLVKPIKRERVLEAIRHVHARN* 948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1372 947 Gene3D - 799 946 - -
Lan4g1372 947 SUPERFAMILY CheY-like 818 945 IPR011006 -
Lan4g1372 947 Pfam His Kinase A (phospho-acceptor) domain 196 259 IPR003661 GO:0000155|GO:0007165
Lan4g1372 947 ProSiteProfiles Response regulatory domain profile. 821 944 IPR001789 GO:0000160
Lan4g1372 947 Pfam Response regulator receiver domain 822 940 IPR001789 GO:0000160
Lan4g1372 947 Gene3D - 260 469 IPR036890 -
Lan4g1372 947 SMART HisKA_10 193 259 IPR003661 GO:0000155|GO:0007165
Lan4g1372 947 SMART HKATPase_4 309 466 IPR003594 -
Lan4g1372 947 PANTHER HISTIDINE KINASE CKI1 53 943 - -
Lan4g1372 947 PANTHER TWO-COMPONENT HISTIDINE KINASE 53 943 - -
Lan4g1372 947 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 181 261 IPR036097 GO:0000155|GO:0007165
Lan4g1372 947 Gene3D - 180 259 - -
Lan4g1372 947 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 248 462 IPR036890 -
Lan4g1372 947 SMART REC_2 820 940 IPR001789 GO:0000160
Lan4g1372 947 CDD REC_hyHK_CKI1_RcsC-like 822 940 - -
Lan4g1372 947 CDD HisKA 191 255 IPR003661 GO:0000155|GO:0007165
Lan4g1372 947 PRINTS Bacterial sensor protein C-terminal signature 390 404 IPR004358 GO:0016310|GO:0016772
Lan4g1372 947 PRINTS Bacterial sensor protein C-terminal signature 408 418 IPR004358 GO:0016310|GO:0016772
Lan4g1372 947 PRINTS Bacterial sensor protein C-terminal signature 424 442 IPR004358 GO:0016310|GO:0016772
Lan4g1372 947 PRINTS Bacterial sensor protein C-terminal signature 450 463 IPR004358 GO:0016310|GO:0016772
Lan4g1372 947 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 309 465 IPR003594 -
Lan4g1372 947 ProSiteProfiles Histidine kinase domain profile. 200 466 IPR005467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1372 Lan-Chr4 22684844 22693216 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1372 57 913 Histidine Kinase Gene Family AT2G47430 41.111 0.0 589
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lan4g1372 HATPase_c 8.4e-26 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1372 - - lang:109344729 1852.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g1372 4 22684844 22693216 Lan4g1372 4 22684844 22693216 ECH