Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1359 ATGGAGAAGAAGGATACGGTAATGAAGATGGAGGGTACAATAGGGGATTCTTCCCTTTCTGGTTATAATCCATTTGGTAACTTGTTTGATTTCTGTGAAGTGGAAAAGAGTTCTTTAGGGATTATGGAGTTACTGGGTGTGCATGAGTATGGTAGTACTCTTCAGTTTCCTGATATACCACAACAACGATTATCAACTATGTCTGTGCCTAAGGTGGTTCCATCTTTTGAGACTGTGAGAGAGTGTAACTCTGAGTTGTTGAACCATCGACCTGCCACTCCTAACTCCTCTTCCATTTCATCCGCATCCACTAGTGAAGCAGTTAATGATGAACACAATAAAACTGTAGACCAAGCTGAAGAAGAAGAAAAGAATAAGATCAAGAAACTGTTGAAGGCCAAGAAGACTAATCAGAAGAAGCATAGAGAACCAAGAGTGGCATTCATGACTAAAAGTGAAGTGGATCATCTAGAAGATGGTTACAGATGGAGAAAGTACGGTAAAAAAGCTGTGAAAAACAGCCCTTTCCCAAGGAGTTACTATCGTTGCACCAGTGCCTCATGTAATGTGAAGAAACGTGTGGAGCGCTCTTTTACTGATCCAAGCATTGTTGTCACAACCTATGAAGGCCAACACACACATCCAAGTCCAGTTATTCCTCGTTCAGGCCTCACTGGAGATCCAGATATCTCCGCCGCAAACTACTTATCTCAGTATCAACAGCAACACTTTCAGCAACAACAACAACTCCTTTTCAATACATTGTCTTCTTTGAGTTTCCCTTACAATCATTCTACGCCTTCAGAGATTGCTTTTGCTCAAGAGAGACTGGTTTGTAATCATGGGAAAACTGCTGCATTTCTAAGGGACCATGGGTTGCTTCAGGATGTTGTTCCTTCACATATGTTGAAGCAAGAGTAG 921 0.4159 MEKKDTVMKMEGTIGDSSLSGYNPFGNLFDFCEVEKSSLGIMELLGVHEYGSTLQFPDIPQQRLSTMSVPKVVPSFETVRECNSELLNHRPATPNSSSISSASTSEAVNDEHNKTVDQAEEEEKNKIKKLLKAKKTNQKKHREPRVAFMTKSEVDHLEDGYRWRKYGKKAVKNSPFPRSYYRCTSASCNVKKRVERSFTDPSIVVTTYEGQHTHPSPVIPRSGLTGDPDISAANYLSQYQQQHFQQQQQLLFNTLSSLSFPYNHSTPSEIAFAQERLVCNHGKTAAFLRDHGLLQDVVPSHMLKQE* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1359 306 Coils Coil 102 136 - -
Lan4g1359 306 PIRSF WRKY_txn_fact_IIc 1 306 IPR017396 GO:0003700
Lan4g1359 306 SUPERFAMILY WRKY DNA-binding domain 149 217 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lan4g1359 306 SMART WRKY_cls 157 216 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lan4g1359 306 MobiDBLite consensus disorder prediction 88 109 - -
Lan4g1359 306 MobiDBLite consensus disorder prediction 110 124 - -
Lan4g1359 306 Pfam WRKY DNA -binding domain 158 215 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lan4g1359 306 MobiDBLite consensus disorder prediction 88 124 - -
Lan4g1359 306 Gene3D WRKY domain 141 218 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lan4g1359 306 ProSiteProfiles WRKY domain profile. 152 217 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lan4g1359 306 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 4 298 IPR044810 GO:0003700
Lan4g1359 306 PANTHER WRKY TRANSCRIPTION FACTOR 4 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1359 Lan-Chr4 22523194 22525095 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1359 30 306 WRKY Transcription Factor Family AT2G47260 43.732 1.69e-64 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lan4g1359 WRKY 4.6e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1359 - - lang:109353563 424.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g1359 4 22523194 22525095 Lan4g1359 4 22523194 22525095 ECH
Lan8g0392 8 6069342 6071124 Lan4g1359 4 22523194 22525095 LSH
Lan20g0548 20 4132272 4134027 Lan4g1359 4 22523194 22525095 LSH
Lan16g0936 16 16416092 16418679 Lan4g1359 4 22523194 22525095 PCT
Lan4g1359 4 22523194 22525095 Lan16g0936 16 16416092 16418679 PCT